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Items: 1 to 20 of 154


The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.

Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.

BMC Microbiol. 2009 May 27;9:109. doi: 10.1186/1471-2180-9-109.


Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.


Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.

Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B, Adkins RM, Lovley DR.

BMC Genomics. 2009 Jul 22;10:331. doi: 10.1186/1471-2164-10-331.


Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae.

Wagner DD, Hug LA, Hatt JK, Spitzmiller MR, Padilla-Crespo E, Ritalahti KM, Edwards EA, Konstantinidis KT, Löffler FE.

BMC Genomics. 2012 May 22;13:200. doi: 10.1186/1471-2164-13-200.


Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.

Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.

Gene. 2010 Dec 1;469(1-2):31-44. doi: 10.1016/j.gene.2010.08.005. Epub 2010 Aug 12.


DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens.

Núñez C, Esteve-Núñez A, Giometti C, Tollaksen S, Khare T, Lin W, Lovley DR, Methé BA.

J Bacteriol. 2006 Apr;188(8):2792-800.


The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.

Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.

BMC Genomics. 2010 Sep 9;11:490. doi: 10.1186/1471-2164-11-490.


Geobacter sulfurreducens strain engineered for increased rates of respiration.

Izallalen M, Mahadevan R, Burgard A, Postier B, Didonato R Jr, Sun J, Schilling CH, Lovley DR.

Metab Eng. 2008 Sep;10(5):267-75. doi: 10.1016/j.ymben.2008.06.005. Epub 2008 Jun 27.


Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.

Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.

BMC Genomics. 2008 Oct 9;9:471. doi: 10.1186/1471-2164-9-471.


Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.

Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Methé BA, Krushkal J.

OMICS. 2008 Mar;12(1):33-59. doi: 10.1089/omi.2007.0043.


Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR.

Appl Environ Microbiol. 2006 Feb;72(2):1558-68.


Interspecies electron transfer via hydrogen and formate rather than direct electrical connections in cocultures of Pelobacter carbinolicus and Geobacter sulfurreducens.

Rotaru AE, Shrestha PM, Liu F, Ueki T, Nevin K, Summers ZM, Lovley DR.

Appl Environ Microbiol. 2012 Nov;78(21):7645-51. doi: 10.1128/AEM.01946-12. Epub 2012 Aug 24.


Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR.

Microbiology. 2008 Sep;154(Pt 9):2589-99. doi: 10.1099/mic.0.2008/017244-0.


Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.

Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.

Gene. 2006 Dec 15;384:73-95. Epub 2006 Jul 20.


Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.

Ueki T, Lovley DR.

Nucleic Acids Res. 2010 Jan;38(3):810-21. doi: 10.1093/nar/gkp1085. Epub 2009 Nov 25.

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