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Items: 1 to 20 of 82

2.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

3.

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

4.

Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO.

Nat Genet. 1999 Sep;23(1):41-6.

PMID:
10471496
5.

Lists2Networks: integrated analysis of gene/protein lists.

Lachmann A, Ma'ayan A.

BMC Bioinformatics. 2010 Feb 12;11:87. doi: 10.1186/1471-2105-11-87.

6.

[CGH (comparative genomic hybridization)].

Sakamoto M, Sakamoto H, Suehiro Y, Akiya T, Iwabuchi H, Sakunaga H, Muroya T, Noda T, Sugishita T, Tenjin Y.

Nihon Rinsho. 1996 Apr;54(4):933-43. Review. Japanese.

PMID:
8920653
7.

Cross-organism learning method to discover new gene functionalities.

Domeniconi G, Masseroli M, Moro G, Pinoli P.

Comput Methods Programs Biomed. 2016 Apr;126:20-34. doi: 10.1016/j.cmpb.2015.12.002. Epub 2015 Dec 17.

PMID:
26724853
8.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

9.

Mining the Gene Wiki for functional genomic knowledge.

Good BM, Howe DG, Lin SM, Kibbe WA, Su AI.

BMC Genomics. 2011 Dec 13;12:603. doi: 10.1186/1471-2164-12-603.

10.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

11.

The use of ultra-dense array CGH analysis for the discovery of micro-copy number alterations and gene fusions in the cancer genome.

Przybytkowski E, Ferrario C, Basik M.

BMC Med Genomics. 2011 Jan 27;4:16. doi: 10.1186/1755-8794-4-16.

12.

Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors.

Kallioniemi OP, Kallioniemi A, Piper J, Isola J, Waldman FM, Gray JW, Pinkel D.

Genes Chromosomes Cancer. 1994 Aug;10(4):231-43. Review.

PMID:
7522536
13.

A web-enabled database of human gene expression controlled annotations for gene list functional evaluation.

Ceresa M, Masseroli M, Campi A.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:394-7.

PMID:
18001973
14.

Advanced analysis and visualization of gene copy number and expression data.

Autio R, Saarela M, Järvinen AK, Hautaniemi S, Astola J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S70. doi: 10.1186/1471-2105-10-S1-S70.

15.

Combined use of expression and CGH arrays pinpoints novel candidate genes in Ewing sarcoma family of tumors.

Savola S, Klami A, Tripathi A, Niini T, Serra M, Picci P, Kaski S, Zambelli D, Scotlandi K, Knuutila S.

BMC Cancer. 2009 Jan 14;9:17. doi: 10.1186/1471-2407-9-17.

16.

Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists.

Masseroli M, Bellistri E, Franceschini A, Pinciroli F.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S14.

17.

CAPweb: a bioinformatics CGH array Analysis Platform.

Liva S, Hupé P, Neuvial P, Brito I, Viara E, La Rosa P, Barillot E.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W477-81.

18.

ACTuDB, a new database for the integrated analysis of array-CGH and clinical data for tumors.

Hupé P, La Rosa P, Liva S, Lair S, Servant N, Barillot E.

Oncogene. 2007 Oct 11;26(46):6641-52. Epub 2007 May 14.

PMID:
17496932
19.

Investigating heterogeneous protein annotations toward cross-corpora utilization.

Wang Y, Kim JD, Saetre R, Pyysalo S, Tsujii J.

BMC Bioinformatics. 2009 Dec 9;10:403. doi: 10.1186/1471-2105-10-403.

20.

Gene ontology application to genomic functional annotation, statistical analysis and knowledge mining.

Martucci D, Masseroli M, Pinciroli F.

Stud Health Technol Inform. 2004;102:108-31.

PMID:
15853267

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