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Items: 1 to 20 of 130

1.

Repetitive DNA elements, nucleosome binding and human gene expression.

Huda A, Mariño-Ramírez L, Landsman D, Jordan IK.

Gene. 2009 May 1;436(1-2):12-22. doi: 10.1016/j.gene.2009.01.013. Epub 2009 Feb 5.

2.

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

BMC Genomics. 2008 May 17;9:226. doi: 10.1186/1471-2164-9-226.

3.

Uniformity of nucleosome preservation pattern in Mammalian sperm and its connection to repetitive DNA elements.

Samans B, Yang Y, Krebs S, Sarode GV, Blum H, Reichenbach M, Wolf E, Steger K, Dansranjavin T, Schagdarsurengin U.

Dev Cell. 2014 Jul 14;30(1):23-35. doi: 10.1016/j.devcel.2014.05.023. Epub 2014 Jul 3.

4.

Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?

Ponts N, Harris EY, Lonardi S, Le Roch KG.

Infect Genet Evol. 2011 Jun;11(4):716-24. doi: 10.1016/j.meegid.2010.08.002. Epub 2010 Aug 11.

5.

Dynamic nucleosome organization at hox promoters during zebrafish embryogenesis.

Weicksel SE, Xu J, Sagerström CG.

PLoS One. 2013 May 9;8(5):e63175. doi: 10.1371/journal.pone.0063175. Print 2013.

6.

The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation.

Lin Z, Wu WS, Liang H, Woo Y, Li WH.

BMC Genomics. 2010 Oct 19;11:581. doi: 10.1186/1471-2164-11-581.

7.

Nucleosome organization in the vicinity of transcription factor binding sites in the human genome.

Nie Y, Cheng X, Chen J, Sun X.

BMC Genomics. 2014 Jun 19;15:493. doi: 10.1186/1471-2164-15-493.

8.

Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters.

Dreos R, Ambrosini G, Bucher P.

PLoS Comput Biol. 2016 Oct 7;12(10):e1005144. doi: 10.1371/journal.pcbi.1005144. eCollection 2016 Oct.

9.

Nucleosome eviction from MHC class II promoters controls positioning of the transcription start site.

Leimgruber E, Seguín-Estévez Q, Dunand-Sauthier I, Rybtsova N, Schmid CD, Ambrosini G, Bucher P, Reith W.

Nucleic Acids Res. 2009 May;37(8):2514-28. doi: 10.1093/nar/gkp116. Epub 2009 Mar 5.

10.

DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter.

Han H, Cortez CC, Yang X, Nichols PW, Jones PA, Liang G.

Hum Mol Genet. 2011 Nov 15;20(22):4299-310. doi: 10.1093/hmg/ddr356. Epub 2011 Aug 11.

11.

Epigenetic regulation of transposable element derived human gene promoters.

Huda A, Bowen NJ, Conley AB, Jordan IK.

Gene. 2011 Apr 1;475(1):39-48. doi: 10.1016/j.gene.2010.12.010. Epub 2011 Jan 6.

PMID:
21215797
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15.

Two independent transcription initiation codes overlap on vertebrate core promoters.

Haberle V, Li N, Hadzhiev Y, Plessy C, Previti C, Nepal C, Gehrig J, Dong X, Akalin A, Suzuki AM, van IJcken WFJ, Armant O, Ferg M, Strähle U, Carninci P, Müller F, Lenhard B.

Nature. 2014 Mar 20;507(7492):381-385. doi: 10.1038/nature12974. Epub 2014 Feb 16.

16.

Alternative promoters and repetitive DNA elements define the species-dependent tissue-specific expression of the FMO1 genes of human and mouse.

Shephard EA, Chandan P, Stevanovic-Walker M, Edwards M, Phillips IR.

Biochem J. 2007 Sep 15;406(3):491-9.

17.

Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters.

Erb I, van Nimwegen E.

PLoS One. 2011;6(9):e24279. doi: 10.1371/journal.pone.0024279. Epub 2011 Sep 9.

18.

Nucleosome rotational setting is associated with transcriptional regulation in promoters of tissue-specific human genes.

Hebert C, Roest Crollius H.

Genome Biol. 2010;11(5):R51. doi: 10.1186/gb-2010-11-5-r51. Epub 2010 May 12.

19.

Interactions of chromatin context, binding site sequence content, and sequence evolution in stress-induced p53 occupancy and transactivation.

Su D, Wang X, Campbell MR, Song L, Safi A, Crawford GE, Bell DA.

PLoS Genet. 2015 Jan 8;11(1):e1004885. doi: 10.1371/journal.pgen.1004885. eCollection 2015 Jan.

20.

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U.

Genome Biol. 2009;10(7):R73. doi: 10.1186/gb-2009-10-7-r73. Epub 2009 Jul 9.

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