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Items: 1 to 20 of 84

1.

Genomic and structural aspects of protein evolution.

Chothia C, Gough J.

Biochem J. 2009 Apr 1;419(1):15-28. doi: 10.1042/BJ20090122. Review.

PMID:
19272021
2.

The relationship between domain duplication and recombination.

Vogel C, Teichmann SA, Pereira-Leal J.

J Mol Biol. 2005 Feb 11;346(1):355-65. Epub 2004 Dec 23.

PMID:
15663950
3.

Domain combinations in archaeal, eubacterial and eukaryotic proteomes.

Apic G, Gough J, Teichmann SA.

J Mol Biol. 2001 Jul 6;310(2):311-25.

PMID:
11428892
4.

Protein family expansions and biological complexity.

Vogel C, Chothia C.

PLoS Comput Biol. 2006 May;2(5):e48. Epub 2006 May 26.

5.

This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes.

Zmasek CM, Godzik A.

PLoS Comput Biol. 2012;8(11):e1002701. doi: 10.1371/journal.pcbi.1002701. Epub 2012 Nov 15.

6.

Supra-domains: evolutionary units larger than single protein domains.

Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA.

J Mol Biol. 2004 Feb 20;336(3):809-23.

PMID:
15095989
7.
8.

Orthologs, paralogs and genome comparisons.

Gogarten JP, Olendzenski L.

Curr Opin Genet Dev. 1999 Dec;9(6):630-6. Review.

PMID:
10607614
9.

Protein families in the metazoan genome.

Chothia C.

Dev Suppl. 1994:27-33. Review.

PMID:
7579522
10.

Protein families and their evolution-a structural perspective.

Orengo CA, Thornton JM.

Annu Rev Biochem. 2005;74:867-900. Review.

PMID:
15954844
11.

Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

Zhang PG, Huang SZ, Pin AL, Adams KL.

Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054. Epub 2010 Feb 25.

PMID:
20185454
12.

Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications.

Carretero-Paulet L, Fares MA.

Mol Biol Evol. 2012 Nov;29(11):3541-51. doi: 10.1093/molbev/mss162. Epub 2012 Jun 24.

PMID:
22734049
13.

Evolution of protein superfamilies and bacterial genome size.

Ranea JA, Buchan DW, Thornton JM, Orengo CA.

J Mol Biol. 2004 Feb 27;336(4):871-87.

PMID:
15095866
14.

An insight into domain combinations.

Apic G, Gough J, Teichmann SA.

Bioinformatics. 2001;17 Suppl 1:S83-9.

PMID:
11472996
15.

Evolution of domain promiscuity in eukaryotic genomes--a perspective from the inferred ancestral domain architectures.

Cohen-Gihon I, Fong JH, Sharan R, Nussinov R, Przytycka TM, Panchenko AR.

Mol Biosyst. 2011 Mar;7(3):784-92. doi: 10.1039/c0mb00182a. Epub 2010 Dec 3.

16.

Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model.

Qian J, Luscombe NM, Gerstein M.

J Mol Biol. 2001 Nov 2;313(4):673-81.

PMID:
11697896
17.

The evolution of gene duplicates.

Otto SP, Yong P.

Adv Genet. 2002;46:451-83. Review.

PMID:
11931235
18.

Diversity and evolution of the thyroglobulin type-1 domain superfamily.

Novinec M, Kordis D, Turk V, Lenarcic B.

Mol Biol Evol. 2006 Apr;23(4):744-55. Epub 2005 Dec 20.

PMID:
16368776

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