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Items: 1 to 20 of 118

1.

Quantification of rare allelic variants from pooled genomic DNA.

Druley TE, Vallania FL, Wegner DJ, Varley KE, Knowles OL, Bonds JA, Robison SW, Doniger SW, Hamvas A, Cole FS, Fay JC, Mitra RD.

Nat Methods. 2009 Apr;6(4):263-5. doi: 10.1038/nmeth.1307.

2.

Genome resequencing and genetic variation.

Stratton M.

Nat Biotechnol. 2008 Jan;26(1):65-6. doi: 10.1038/nbt0108-65. Review. No abstract available.

PMID:
18183021
3.

Validation of single nucleotide polymorphism quantification in pooled DNA samples with SNaPIT. A glycosylase-mediated methods for polymorphism detection method.

Curran S, Hill L, O'Grady G, Turic D, Asherson P, Taylor E, Sham P, Craig I, Vaughan P.

Mol Biotechnol. 2002 Nov;22(3):253-62.

PMID:
12448880
4.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

5.

Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.

6.
7.

Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis.

Niranjan TS, Adamczyk A, Bravo HC, Taub MA, Wheelan SJ, Irizarry R, Wang T.

Genome Biol. 2011 Sep 28;12(9):R93. doi: 10.1186/gb-2011-12-9-r93.

8.

Automated identification of single nucleotide polymorphisms from sequencing data.

Takahashi M, Matsuda F, Margetic N, Lathrop M.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:87-93.

PMID:
15838126
9.

LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage.

Hao K, Di X, Cawley S.

Bioinformatics. 2007 Jan 15;23(2):252-4.

10.

SNP discovery using advanced algorithms and neural networks.

Unneberg P, Strömberg M, Sterky F.

Bioinformatics. 2005 May 15;21(10):2528-30.

11.
12.

Extending assembly of short DNA sequences to handle error.

Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER, Dangl JL, Jones CD.

Bioinformatics. 2007 Nov 1;23(21):2942-4.

13.

Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling.

Marroni F, Pinosio S, Di Centa E, Jurman I, Boerjan W, Felice N, Cattonaro F, Morgante M.

Plant J. 2011 Aug;67(4):736-45. doi: 10.1111/j.1365-313X.2011.04627.x. Erratum in: Plant J. 2012 Feb;69(3):564.

14.

MPDA: microarray pooled DNA analyzer.

Yang HC, Huang MC, Li LH, Lin CH, Yu AL, Diccianni MB, Wu JY, Chen YT, Fann CS.

BMC Bioinformatics. 2008 Apr 15;9:196. doi: 10.1186/1471-2105-9-196.

15.
16.

Genome assembly and haplotyping with Hi-C.

Korbel JO, Lee C.

Nat Biotechnol. 2013 Dec;31(12):1099-101. doi: 10.1038/nbt.2764. No abstract available.

PMID:
24316648
17.

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

Matsuzaki H, Dong S, Loi H, Di X, Liu G, Hubbell E, Law J, Berntsen T, Chadha M, Hui H, Yang G, Kennedy GC, Webster TA, Cawley S, Walsh PS, Jones KW, Fodor SP, Mei R.

Nat Methods. 2004 Nov;1(2):109-11.

PMID:
15782172
18.

Strainer: software for analysis of population variation in community genomic datasets.

Eppley JM, Tyson GW, Getz WM, Banfield JF.

BMC Bioinformatics. 2007 Oct 17;8:398.

19.

SNP discovery in pooled samples with mismatch repair detection.

Fakhrai-Rad H, Zheng J, Willis TD, Wong K, Suyenaga K, Moorhead M, Eberle J, Thorstenson YR, Jones T, Davis RW, Namsaraev E, Faham M.

Genome Res. 2004 Jul;14(7):1404-12.

20.

PoooL: an efficient method for estimating haplotype frequencies from large DNA pools.

Zhang H, Yang HC, Yang Y.

Bioinformatics. 2008 Sep 1;24(17):1942-8. doi: 10.1093/bioinformatics/btn324.

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