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Items: 1 to 20 of 709

1.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

2.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

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GeneTrail--advanced gene set enrichment analysis.

Backes C, Keller A, Kuentzer J, Kneissl B, Comtesse N, Elnakady YA, Müller R, Meese E, Lenhof HP.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W186-92. Epub 2007 May 25.

8.

GObar: a gene ontology based analysis and visualization tool for gene sets.

Lee JS, Katari G, Sachidanandam R.

BMC Bioinformatics. 2005 Jul 25;6:189.

9.

GARNET--gene set analysis with exploration of annotation relations.

Rho K, Kim B, Jang Y, Lee S, Bae T, Seo J, Seo C, Lee J, Kang H, Yu U, Kim S, Lee S, Kim WK.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S25. doi: 10.1186/1471-2105-12-S1-S25.

10.

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data.

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S9. doi: 10.1186/1471-2105-10-S11-S9.

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GeneBrowser 2: an application to explore and identify common biological traits in a set of genes.

Arrais JP, Fernandes J, Pereira J, Oliveira JL.

BMC Bioinformatics. 2010 Jul 21;11:389. doi: 10.1186/1471-2105-11-389.

13.

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis.

Zheng Q, Wang XJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W358-63. doi: 10.1093/nar/gkn276. Epub 2008 May 16.

14.

Using GOstats to test gene lists for GO term association.

Falcon S, Gentleman R.

Bioinformatics. 2007 Jan 15;23(2):257-8. Epub 2006 Nov 10.

PMID:
17098774
15.

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

Reimand J, Kull M, Peterson H, Hansen J, Vilo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. Epub 2007 May 3.

16.

GoBean: a Java GUI application for visual exploration of GO term enrichments.

Lee S, Cha JY, Kim H, Yu U.

BMB Rep. 2012 Feb;45(2):120-5. doi: 10.5483/BMBRep.2012.45.2.120.

17.

SEGS: search for enriched gene sets in microarray data.

Trajkovski I, Lavrac N, Tolar J.

J Biomed Inform. 2008 Aug;41(4):588-601. doi: 10.1016/j.jbi.2007.12.001. Epub 2007 Dec 15.

18.

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M.

Bioinformatics. 2005 Sep 15;21(18):3674-6. Epub 2005 Aug 4.

PMID:
16081474
19.

Gene Class expression: analysis tool of Gene Ontology terms with gene expression data.

Pereira GS, Brandão RM, Giuliatti S, Zago MA, Silva WA Jr.

Genet Mol Res. 2006 Mar 31;5(1):108-14.

20.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411. doi: 10.1186/1471-2164-10-411.

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