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Items: 1 to 20 of 197

1.

ASTD: The Alternative Splicing and Transcript Diversity database.

Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boué S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigó R, Bork P, Doeberitz Mv, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D.

Genomics. 2009 Mar;93(3):213-20. doi: 10.1016/j.ygeno.2008.11.003. Epub 2008 Dec 24.

3.

AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.

Le Texier V, Riethoven JJ, Kumanduri V, Gopalakrishnan C, Lopez F, Gautheret D, Thanaraj TA.

BMC Bioinformatics. 2006 Mar 23;7:169.

4.

ECgene: genome annotation for alternative splicing.

Kim P, Kim N, Lee Y, Kim B, Shin Y, Lee S.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D75-9.

5.

ASD: the Alternative Splicing Database.

Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D64-9.

6.

ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.

Kim N, Shin S, Lee S.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W181-6.

7.

ASAP: the Alternative Splicing Annotation Project.

Lee C, Atanelov L, Modrek B, Xing Y.

Nucleic Acids Res. 2003 Jan 1;31(1):101-5.

8.

TassDB2 - A comprehensive database of subtle alternative splicing events.

Sinha R, Lenser T, Jahn N, Gausmann U, Friedel S, Szafranski K, Huse K, Rosenstiel P, Hampe J, Schuster S, Hiller M, Backofen R, Platzer M.

BMC Bioinformatics. 2010 Apr 29;11:216. doi: 10.1186/1471-2105-11-216.

9.

easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.

Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.

BMC Bioinformatics. 2008 Oct 14;9:432. doi: 10.1186/1471-2105-9-432.

10.

DEDB: a database of Drosophila melanogaster exons in splicing graph form.

Lee BT, Tan TW, Ranganathan S.

BMC Bioinformatics. 2004 Dec 7;5:189.

11.

Legume Resources: MtDB and Medicago.Org.

Retzel EF, Johnson JE, Crow JA, Lamblin AF, Paule CE.

Methods Mol Biol. 2007;406:261-74.

PMID:
18287697
12.

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

Yates T, Okoniewski MJ, Miller CJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D780-6. Epub 2007 Oct 11.

13.

ASD: a bioinformatics resource on alternative splicing.

Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, Barbosa-Morais NL, Thanaraj TA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D46-55.

14.

A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis.

He C, Zhou F, Zuo Z, Cheng H, Zhou R.

PLoS One. 2009;4(3):e4732. doi: 10.1371/journal.pone.0004732. Epub 2009 Mar 6.

15.

PALS db: Putative Alternative Splicing database.

Huang YH, Chen YT, Lai JJ, Yang ST, Yang UC.

Nucleic Acids Res. 2002 Jan 1;30(1):186-90.

16.

ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs.

Kim N, Lim D, Lee S, Kim H.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W681-5.

17.

ASGS: an alternative splicing graph web service.

Bollina D, Lee BT, Tan TW, Ranganathan S.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W444-7.

18.

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.

Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S17.

19.

Genome-wide assembly and analysis of alternative transcripts in mouse.

Sharov AA, Dudekula DB, Ko MS.

Genome Res. 2005 May;15(5):748-54.

20.

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, Hayashizaki Y, Gaasterland T; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1290-300.

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