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Items: 1 to 20 of 131

1.

EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.

Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJ, Butcher SA.

BMC Bioinformatics. 2008 Nov 25;9:493. doi: 10.1186/1471-2105-9-493.

2.

MiMiR--an integrated platform for microarray data sharing, mining and analysis.

Tomlinson C, Thimma M, Alexandrakis S, Castillo T, Dennis JL, Brooks A, Bradley T, Turnbull C, Blaveri E, Barton G, Chiba N, Maratou K, Soutter P, Aitman T, Game L.

BMC Bioinformatics. 2008 Sep 18;9:379. doi: 10.1186/1471-2105-9-379.

3.

mu-CS: an extension of the TM4 platform to manage Affymetrix binary data.

Guzzi PH, Cannataro M.

BMC Bioinformatics. 2010 Jun 10;11:315. doi: 10.1186/1471-2105-11-315.

4.

Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.

Guzzi PH, Cannataro M.

Comput Methods Programs Biomed. 2013 Aug;111(2):402-9. doi: 10.1016/j.cmpb.2013.04.006. Epub 2013 May 31.

PMID:
23731720
5.

EDGE(3): a web-based solution for management and analysis of Agilent two color microarray experiments.

Vollrath AL, Smith AA, Craven M, Bradfield CA.

BMC Bioinformatics. 2009 Sep 4;10:280. doi: 10.1186/1471-2105-10-280.

6.

A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data.

Corradi L, Fato M, Porro I, Scaglione S, Torterolo L.

BMC Bioinformatics. 2008 Nov 13;9:480. doi: 10.1186/1471-2105-9-480.

7.

ArrayQuest: a web resource for the analysis of DNA microarray data.

Argraves GL, Jani S, Barth JL, Argraves WS.

BMC Bioinformatics. 2005 Dec 1;6:287.

8.

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.

9.

A digital repository with an extensible data model for biobanking and genomic analysis management.

Izzo M, Mortola F, Arnulfo G, Fato MM, Varesio L.

BMC Genomics. 2014;15 Suppl 3:S3. doi: 10.1186/1471-2164-15-S3-S3. Epub 2014 May 6.

11.

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46. doi: 10.1186/1471-2105-9-46.

12.

Goober: a fully integrated and user-friendly microarray data management and analysis solution for core labs and bench biologists.

Luo W, Gudipati M, Jung K, Chen M, Marschke KB.

J Integr Bioinform. 2009 Aug 23;6(1):108. doi: 10.2390/biecoll-jib-2009-108.

PMID:
20134074
13.

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.

Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A.

BMC Bioinformatics. 2009 Feb 6;10:50. doi: 10.1186/1471-2105-10-50.

14.

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization.

Glaab E, Garibaldi JM, Krasnogor N.

BMC Bioinformatics. 2009 Oct 28;10:358. doi: 10.1186/1471-2105-10-358.

15.
16.

Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis.

Lohse M, Nunes-Nesi A, Krüger P, Nagel A, Hannemann J, Giorgi FM, Childs L, Osorio S, Walther D, Selbig J, Sreenivasulu N, Stitt M, Fernie AR, Usadel B.

Plant Physiol. 2010 Jun;153(2):642-51. doi: 10.1104/pp.109.152553. Epub 2010 Apr 13.

17.

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.

Burgarella S, Cattaneo D, Pinciroli F, Masseroli M.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S6.

18.

MAGMA: analysis of two-channel microarrays made easy.

Rehrauer H, Zoller S, Schlapbach R.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W86-90. Epub 2007 May 21.

19.

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

Chatziioannou A, Moulos P, Kolisis FN.

BMC Bioinformatics. 2009 Oct 27;10:354. doi: 10.1186/1471-2105-10-354.

20.

A repository based on a dynamically extensible data model supporting multidisciplinary research in neuroscience.

Corradi L, Porro I, Schenone A, Momeni P, Ferrari R, Nobili F, Ferrara M, Arnulfo G, Fato MM.

BMC Med Inform Decis Mak. 2012 Oct 8;12:115. doi: 10.1186/1472-6947-12-115.

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