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Items: 1 to 20 of 72

1.

UCbase & miRfunc: a database of ultraconserved sequences and microRNA function.

Taccioli C, Fabbri E, Visone R, Volinia S, Calin GA, Fong LY, Gambari R, Bottoni A, Acunzo M, Hagan J, Iorio MV, Piovan C, Romano G, Croce CM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D41-8. doi: 10.1093/nar/gkn702. Epub 2008 Oct 22.

2.

UCbase 2.0: ultraconserved sequences database (2014 update).

Lomonaco V, Martoglia R, Mandreoli F, Anderlucci L, Emmett W, Bicciato S, Taccioli C.

Database (Oxford). 2014 Jun 19;2014. pii: bau062. doi: 10.1093/database/bau062. Print 2014.

3.

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.

Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S, Hofacker IL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.

4.

miRBase: the microRNA sequence database.

Griffiths-Jones S.

Methods Mol Biol. 2006;342:129-38. Review.

PMID:
16957372
5.

Transcribed ultraconserved region in human cancers.

Peng JC, Shen J, Ran ZH.

RNA Biol. 2013 Dec;10(12):1771-7. doi: 10.4161/rna.26995. Epub 2013 Nov 4. Review.

6.

Argonaute--a database for gene regulation by mammalian microRNAs.

Shahi P, Loukianiouk S, Bohne-Lang A, Kenzelmann M, Küffer S, Maertens S, Eils R, Gröne HJ, Gretz N, Brors B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D115-8.

7.

mESAdb: microRNA expression and sequence analysis database.

Kaya KD, Karakülah G, Yakicier CM, Acar AC, Konu O.

Nucleic Acids Res. 2011 Jan;39(Database issue):D170-80. doi: 10.1093/nar/gkq1256.

8.

ViTa: prediction of host microRNAs targets on viruses.

Hsu PW, Lin LZ, Hsu SD, Hsu JB, Huang HD.

Nucleic Acids Res. 2007 Jan;35(Database issue):D381-5. Epub 2006 Dec 5.

9.

Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas.

Calin GA, Liu CG, Ferracin M, Hyslop T, Spizzo R, Sevignani C, Fabbri M, Cimmino A, Lee EJ, Wojcik SE, Shimizu M, Tili E, Rossi S, Taccioli C, Pichiorri F, Liu X, Zupo S, Herlea V, Gramantieri L, Lanza G, Alder H, Rassenti L, Volinia S, Schmittgen TD, Kipps TJ, Negrini M, Croce CM.

Cancer Cell. 2007 Sep;12(3):215-29.

10.

The microRNA Registry.

Griffiths-Jones S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.

11.

Vir-Mir db: prediction of viral microRNA candidate hairpins.

Li SC, Shiau CK, Lin WC.

Nucleic Acids Res. 2008 Jan;36(Database issue):D184-9. Epub 2007 Aug 15.

12.

MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs.

Mhuantong W, Wichadakul D.

BMC Genomics. 2009 Aug 7;10:366. doi: 10.1186/1471-2164-10-366.

13.

miRBase: tools for microRNA genomics.

Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub 2007 Nov 8.

14.

miRNEST database: an integrative approach in microRNA search and annotation.

Szcześniak MW, Deorowicz S, Gapski J, Kaczyński Ł, Makalowska I.

Nucleic Acids Res. 2012 Jan;40(Database issue):D198-204. doi: 10.1093/nar/gkr1159. Epub 2011 Dec 1.

15.

Annotation of mammalian primary microRNAs.

Saini HK, Enright AJ, Griffiths-Jones S.

BMC Genomics. 2008 Nov 27;9:564. doi: 10.1186/1471-2164-9-564.

16.

ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs.

Nam JW, Kim J, Kim SK, Zhang BT.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W455-8.

17.

miROrtho: computational survey of microRNA genes.

Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D111-7. doi: 10.1093/nar/gkn707. Epub 2008 Oct 15.

18.

SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression.

Liu X, Wang S, Meng F, Wang J, Zhang Y, Dai E, Yu X, Li X, Jiang W.

Bioinformatics. 2013 Feb 1;29(3):409-11. doi: 10.1093/bioinformatics/bts698. Epub 2012 Dec 5.

PMID:
23220571
19.

Identification of plant microRNA homologs.

Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH.

Bioinformatics. 2006 Feb 1;22(3):359-60. Epub 2005 Nov 29.

PMID:
16317073
20.

miRBase: microRNA sequences and annotation.

Griffiths-Jones S.

Curr Protoc Bioinformatics. 2010 Mar;Chapter 12:Unit 12.9.1-10. doi: 10.1002/0471250953.bi1209s29.

PMID:
20205188

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