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Items: 1 to 20 of 341

1.

STRING 8--a global view on proteins and their functional interactions in 630 organisms.

Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. doi: 10.1093/nar/gkn760. Epub 2008 Oct 21.

2.

STRING 7--recent developments in the integration and prediction of protein interactions.

von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Krüger B, Snel B, Bork P.

Nucleic Acids Res. 2007 Jan;35(Database issue):D358-62. Epub 2006 Nov 10.

3.

STRING: known and predicted protein-protein associations, integrated and transferred across organisms.

von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, Jouffre N, Huynen MA, Bork P.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D433-7.

4.

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D561-8. doi: 10.1093/nar/gkq973. Epub 2010 Nov 2.

5.

STRING v9.1: protein-protein interaction networks, with increased coverage and integration.

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.

6.

Bacteriome.org--an integrated protein interaction database for E. coli.

Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16.

7.

STRING: a database of predicted functional associations between proteins.

von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B.

Nucleic Acids Res. 2003 Jan 1;31(1):258-61.

8.

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2015 Jan;43(Database issue):D447-52. doi: 10.1093/nar/gku1003. Epub 2014 Oct 28.

9.

UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome.

Chaurasia G, Malhotra S, Russ J, Schnoegl S, Hänig C, Wanker EE, Futschik ME.

Nucleic Acids Res. 2009 Jan;37(Database issue):D657-60. doi: 10.1093/nar/gkn841. Epub 2008 Nov 4.

10.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

11.

MINT: the Molecular INTeraction database.

Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D572-4. Epub 2006 Nov 29.

12.

EcID. A database for the inference of functional interactions in E. coli.

Andres Leon E, Ezkurdia I, García B, Valencia A, Juan D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D629-35. doi: 10.1093/nar/gkn853. Epub 2008 Nov 12.

13.

SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.

14.

Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. Epub 2007 Nov 21.

15.

PSORTdb: a protein subcellular localization database for bacteria.

Rey S, Acab M, Gardy JL, Laird MR, deFays K, Lambert C, Brinkman FS.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D164-8.

16.

Computational prediction of protein-protein interactions.

Skrabanek L, Saini HK, Bader GD, Enright AJ.

Mol Biotechnol. 2008 Jan;38(1):1-17. Epub 2007 Aug 14. Review.

PMID:
18095187
17.

BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.

McDermott J, Guerquin M, Frazier Z, Chang AN, Samudrala R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W324-5.

18.

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.

Ruepp A, Doudieu ON, van den Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko IV, Oesterheld M, Stümpflen V, Mewes HW.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D568-71.

19.

SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803.

Kim WY, Kang S, Kim BC, Oh J, Cho S, Bhak J, Choi JS.

BMC Bioinformatics. 2008;9 Suppl 1:S20. doi: 10.1186/1471-2105-9-S1-S20.

20.

FPPI: Fusarium graminearum protein-protein interaction database.

Zhao XM, Zhang XW, Tang WH, Chen L.

J Proteome Res. 2009 Oct;8(10):4714-21. doi: 10.1021/pr900415b.

PMID:
19673500

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