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Items: 1 to 20 of 146

1.

Comparison of the diagnostic performance of human whole genome microarrays using mixed-tissue RNA reference samples.

Thompson KL, Pine PS.

Toxicol Lett. 2009 Apr 10;186(1):58-61. doi: 10.1016/j.toxlet.2008.08.018. Epub 2008 Sep 7.

PMID:
18822358
2.

Use of diagnostic accuracy as a metric for evaluating laboratory proficiency with microarray assays using mixed-tissue RNA reference samples.

Pine PS, Boedigheimer M, Rosenzweig BA, Turpaz Y, He YD, Delenstarr G, Ganter B, Jarnagin K, Jones WD, Reid LH, Thompson KL.

Pharmacogenomics. 2008 Nov;9(11):1753-63. doi: 10.2217/14622416.9.11.1753.

3.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

4.

Assessment of repeated microarray experiments using mixed tissue RNA reference samples.

Mongan MA, Higgins M, Pine PS, Afshari C, Hamadeh H.

Biotechniques. 2008 Sep;45(3):283-92. doi: 10.2144/000112914. Erratum in: Biotechniques. 2008 Dec;45(6):607. Mongan, Ann [corrected to Mongan, M Ann]; Pine, Scott [corrected to Pine, P Scott].

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Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S.

Plant Mol Biol. 2002 Jan;48(1-2):119-31. Review.

PMID:
11860205
8.

QA/QC issues to aid regulatory acceptance of microarray gene expression data.

Fuscoe JC, Tong W, Shi L.

Environ Mol Mutagen. 2007 Jun;48(5):349-53.

PMID:
17567852
9.

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.

Maouche S, Poirier O, Godefroy T, Olaso R, Gut I, Collet JP, Montalescot G, Cambien F.

BMC Genomics. 2008 Jun 25;9:302. doi: 10.1186/1471-2164-9-302.

10.

Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay.

Fan X, Fang H, Hong H, Perkins R, Shi L, Tong W.

Anal Biochem. 2009 Feb 15;385(2):203-7. doi: 10.1016/j.ab.2008.11.019. Epub 2008 Dec 6.

PMID:
19059192
11.

Quality assessment of the Affymetrix U133A&B probesets by target sequence mapping and expression data analysis.

Orlov YL, Zhou J, Lipovich L, Shahab A, Kuznetsov VA.

In Silico Biol. 2007;7(3):241-60.

PMID:
18415975
12.

Tissue microarrays: applications in genomic research.

Watanabe A, Cornelison R, Hostetter G.

Expert Rev Mol Diagn. 2005 Mar;5(2):171-81. Review.

PMID:
15833047
13.

Evaluation of external RNA controls for the assessment of microarray performance.

Tong W, Lucas AB, Shippy R, Fan X, Fang H, Hong H, Orr MS, Chu TM, Guo X, Collins PJ, Sun YA, Wang SJ, Bao W, Wolfinger RD, Shchegrova S, Guo L, Warrington JA, Shi L.

Nat Biotechnol. 2006 Sep;24(9):1132-9.

PMID:
16964227
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15.

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.

Patterson TA, Lobenhofer EK, Fulmer-Smentek SB, Collins PJ, Chu TM, Bao W, Fang H, Kawasaki ES, Hager J, Tikhonova IR, Walker SJ, Zhang L, Hurban P, de Longueville F, Fuscoe JC, Tong W, Shi L, Wolfinger RD.

Nat Biotechnol. 2006 Sep;24(9):1140-50.

PMID:
16964228
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17.

Recovering filter-based microarray data for pathways analysis using a multipoint alignment strategy.

Reid R, Dix DJ, Miller D, Krawetz SA.

Biotechniques. 2001 Apr;30(4):762-6, 768.

PMID:
11314258
18.

[Recent advances in molecular diagnostic tests].

Miyachi H.

Rinsho Byori. 2002 Nov;Suppl 123:19-29. Review. Japanese.

PMID:
12652786
19.

Universal RNA reference materials for gene expression.

Cronin M, Ghosh K, Sistare F, Quackenbush J, Vilker V, O'Connell C.

Clin Chem. 2004 Aug;50(8):1464-71. Epub 2004 May 20.

20.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, RisueƱo A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

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