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A meta-analysis of microarray gene expression in mouse stem cells: redefining stemness.

Edwards YJ, Bryson K, Jones DT.

PLoS One. 2008 Jul 16;3(7):e2712. doi: 10.1371/journal.pone.0002712.


Computational integration of homolog and pathway gene module expression reveals general stemness signatures.

Koeva M, Forsberg EC, Stuart JM.

PLoS One. 2011 Apr 29;6(4):e18968. doi: 10.1371/journal.pone.0018968.


Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.

Hosseinpour B, Bakhtiarizadeh MR, Khosravi P, Ebrahimie E.

Gene. 2013 Dec 1;531(2):212-9. doi: 10.1016/j.gene.2013.09.011. Epub 2013 Sep 13.


Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.


Rationale and study design of the CardioGene Study: genomics of in-stent restenosis.

Ganesh SK, Skelding KA, Mehta L, O'Neill K, Joo J, Zheng G, Goldstein J, Simari R, Billings E, Geller NL, Holmes D, O'Neill WW, Nabel EG.

Pharmacogenomics. 2004 Oct;5(7):952-1004.


Gene set-based module discovery in the breast cancer transcriptome.

Niida A, Smith AD, Imoto S, Aburatani H, Zhang MQ, Akiyama T.

BMC Bioinformatics. 2009 Feb 26;10:71. doi: 10.1186/1471-2105-10-71.


Tissue-specific and ubiquitous expression patterns from alternative promoters of human genes.

Jacox E, Gotea V, Ovcharenko I, Elnitski L.

PLoS One. 2010 Aug 18;5(8):e12274. doi: 10.1371/journal.pone.0012274.


[Screening of differential expression genes of human skin epidermal stem cells at different development stages by cDNA microarray technique].

Lan W, Liu DW, Li GH, Mao YG, Chen H, Yi XF, Wang LQ, Peng Y, Zhong QL.

Zhonghua Shao Shang Za Zhi. 2011 Feb;27(1):26-31. Chinese.


Developmentally regulated promoter-switch transcriptionally controls Runx1 function during embryonic hematopoiesis.

Pozner A, Lotem J, Xiao C, Goldenberg D, Brenner O, Negreanu V, Levanon D, Groner Y.

BMC Dev Biol. 2007 Jul 12;7:84.


Adaptively inferring human transcriptional subnetworks.

Das D, Nahlé Z, Zhang MQ.

Mol Syst Biol. 2006;2:2006.0029. Epub 2006 Jun 6.


Genetic modification does not affect the stemness of neural stem cells in nestin promoter-GFP transgenic mice.

Park JH, Ahn JI, Kim SY, Park KS, Lee YD, Yamaguchi M, Chung HJ.

Neurosci Lett. 2007 Jun 29;421(3):185-90. Epub 2007 Mar 2.


Comparative transcriptional profiling of the limbal epithelial crypt demonstrates its putative stem cell niche characteristics.

Kulkarni BB, Tighe PJ, Mohammed I, Yeung AM, Powe DG, Hopkinson A, Shanmuganathan VA, Dua HS.

BMC Genomics. 2010 Sep 29;11:526. doi: 10.1186/1471-2164-11-526.


Promoter profiling and coexpression data analysis identifies 24 novel genes that are coregulated with AMPA receptor genes, GRIAs.

Chong A, Zhang Z, Choi KP, Choudhary V, Djamgoz MB, Zhang G, Bajic VB.

Genomics. 2007 Mar;89(3):378-84. Epub 2007 Jan 5.


Identification of novel stem cell markers using gap analysis of gene expression data.

Krzyzanowski PM, Andrade-Navarro MA.

Genome Biol. 2007;8(9):R193.


Diverse adult stem cells share specific higher-order patterns of gene expression.

Doherty JM, Geske MJ, Stappenbeck TS, Mills JC.

Stem Cells. 2008 Aug;26(8):2124-30. doi: 10.1634/stemcells.2008-0380. Epub 2008 May 29.


Genome-wide identification of AR-regulated genes translated in Sertoli cells in vivo using the RiboTag approach.

De Gendt K, Verhoeven G, Amieux PS, Wilkinson MF.

Mol Endocrinol. 2014 Apr;28(4):575-91. doi: 10.1210/me.2013-1391. Epub 2014 Feb 25.


"Stemness": transcriptional profiling of embryonic and adult stem cells.

Ramalho-Santos M, Yoon S, Matsuzaki Y, Mulligan RC, Melton DA.

Science. 2002 Oct 18;298(5593):597-600. Epub 2002 Sep 12.


Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature".

Evsikov AV, Solter D.

Science. 2003 Oct 17;302(5644):393; author reply 393. No abstract available.

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