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Items: 1 to 20 of 148

1.

TiGER: a database for tissue-specific gene expression and regulation.

Liu X, Yu X, Zack DJ, Zhu H, Qian J.

BMC Bioinformatics. 2008 Jun 9;9:271. doi: 10.1186/1471-2105-9-271.

2.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

3.

Web-based data warehouse on gene expression in human colorectal cancer.

Sagynaliev E, Steinert R, Nestler G, Lippert H, Knoch M, Reymond MA.

Proteomics. 2005 Aug;5(12):3066-78.

PMID:
16041676
4.

How many human genes can be defined as housekeeping with current expression data?

Zhu J, He F, Song S, Wang J, Yu J.

BMC Genomics. 2008 Apr 16;9:172. doi: 10.1186/1471-2164-9-172.

5.

GO based tissue specific functions of mouse using countable gene expression profiles.

Takenaka Y, Matsumoto A, Matsuda H.

Genome Inform. 2007;19:154-65.

PMID:
18546513
6.

COXPRESdb: a database of coexpressed gene networks in mammals.

Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K.

Nucleic Acids Res. 2008 Jan;36(Database issue):D77-82. Epub 2007 Oct 11.

7.
8.

SAMMD: Staphylococcus aureus microarray meta-database.

Nagarajan V, Elasri MO.

BMC Genomics. 2007 Oct 2;8:351.

9.

Cerebellar development transcriptome database (CDT-DB): profiling of spatio-temporal gene expression during the postnatal development of mouse cerebellum.

Sato A, Sekine Y, Saruta C, Nishibe H, Morita N, Sato Y, Sadakata T, Shinoda Y, Kojima T, Furuichi T.

Neural Netw. 2008 Oct;21(8):1056-69. doi: 10.1016/j.neunet.2008.05.004. Epub 2008 Jun 4.

PMID:
18603407
10.

Context-specific metabolic networks are consistent with experiments.

Becker SA, Palsson BO.

PLoS Comput Biol. 2008 May 16;4(5):e1000082. doi: 10.1371/journal.pcbi.1000082.

11.

Meta- and gene set analysis of stomach cancer gene expression data.

Kim SY, Kim JH, Lee HS, Noh SM, Song KS, Cho JS, Jeong HY, Kim WH, Yeom YI, Kim NS, Kim S, Yoo HS, Kim YS.

Mol Cells. 2007 Oct 31;24(2):200-9.

12.

Ranking genes by their co-expression to subsets of pathway members.

Adler P, Peterson H, Agius P, Reimand J, Vilo J.

Ann N Y Acad Sci. 2009 Mar;1158:1-13. doi: 10.1111/j.1749-6632.2008.03747.x.

PMID:
19348627
13.

Modeling nonlinear gene regulatory networks from time series gene expression data.

Fujita A, Sato JR, Garay-Malpartida HM, Sogayar MC, Ferreira CE, Miyano S.

J Bioinform Comput Biol. 2008 Oct;6(5):961-79.

PMID:
18942161
14.

Inference of large-scale gene regulatory networks using regression-based network approach.

Kim H, Lee JK, Park T.

J Bioinform Comput Biol. 2009 Aug;7(4):717-35.

PMID:
19634200
15.

SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum.

Liu F, Chen P, Cui SJ, Wang ZQ, Han ZG.

BMC Genomics. 2008 Jun 26;9:304. doi: 10.1186/1471-2164-9-304.

16.

INTERFEROME: the database of interferon regulated genes.

Samarajiwa SA, Forster S, Auchettl K, Hertzog PJ.

Nucleic Acids Res. 2009 Jan;37(Database issue):D852-7. doi: 10.1093/nar/gkn732. Epub 2008 Nov 7.

17.

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes.

Grote A, Klein J, Retter I, Haddad I, Behling S, Bunk B, Biegler I, Yarmolinetz S, Jahn D, Münch R.

Nucleic Acids Res. 2009 Jan;37(Database issue):D61-5. doi: 10.1093/nar/gkn837. Epub 2008 Oct 30.

18.

Curve-based clustering of time course gene expression data using self-organizing maps.

Chen X.

J Bioinform Comput Biol. 2009 Aug;7(4):645-61.

PMID:
19634196
19.

Network-based prediction of human tissue-specific metabolism.

Shlomi T, Cabili MN, Herrgård MJ, Palsson BØ, Ruppin E.

Nat Biotechnol. 2008 Sep;26(9):1003-10. doi: 10.1038/nbt.1487.

PMID:
18711341
20.

Exploring candidate genes for human brain diseases from a brain-specific gene network.

Liu B, Jiang T, Ma S, Zhao H, Li J, Jiang X, Zhang J.

Biochem Biophys Res Commun. 2006 Nov 3;349(4):1308-14. Epub 2006 Sep 7.

PMID:
16973128

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