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Items: 1 to 20 of 267

1.

lumi: a pipeline for processing Illumina microarray.

Du P, Kibbe WA, Lin SM.

Bioinformatics. 2008 Jul 1;24(13):1547-8. doi: 10.1093/bioinformatics/btn224. Epub 2008 May 8.

PMID:
18467348
2.

Model-based variance-stabilizing transformation for Illumina microarray data.

Lin SM, Du P, Huber W, Kibbe WA.

Nucleic Acids Res. 2008 Feb;36(2):e11. doi: 10.1093/nar/gkm1075. Epub 2008 Jan 4.

3.

IlluminaGUI: graphical user interface for analyzing gene expression data generated on the Illumina platform.

Schultze JL, Eggle D.

Bioinformatics. 2007 Jun 1;23(11):1431-3. Epub 2007 Mar 23.

PMID:
17384020
4.

arrayMagic: two-colour cDNA microarray quality control and preprocessing.

Buness A, Huber W, Steiner K, Sültmann H, Poustka A.

Bioinformatics. 2005 Feb 15;21(4):554-6. Epub 2004 Sep 28.

PMID:
15454413
5.

Importing MAGE-ML format microarray data into BioConductor.

Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B.

Bioinformatics. 2004 Dec 12;20(18):3641-2. Epub 2004 Jul 15.

PMID:
15256416
6.

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.

Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W.

Bioinformatics. 2005 Aug 15;21(16):3439-40.

PMID:
16082012
7.

IGG: A tool to integrate GeneChips for genetic studies.

Li MX, Jiang L, Ho SL, Song YQ, Sham PC.

Bioinformatics. 2007 Nov 15;23(22):3105-7. Epub 2007 Sep 14.

PMID:
17872914
8.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

9.

beadarray: R classes and methods for Illumina bead-based data.

Dunning MJ, Smith ML, Ritchie ME, Tavaré S.

Bioinformatics. 2007 Aug 15;23(16):2183-4. Epub 2007 Jun 22.

PMID:
17586828
10.

pcaMethods--a bioconductor package providing PCA methods for incomplete data.

Stacklies W, Redestig H, Scholz M, Walther D, Selbig J.

Bioinformatics. 2007 May 1;23(9):1164-7. Epub 2007 Mar 7.

PMID:
17344241
11.

Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.

Guzzi PH, Cannataro M.

Comput Methods Programs Biomed. 2013 Aug;111(2):402-9. doi: 10.1016/j.cmpb.2013.04.006. Epub 2013 May 31.

PMID:
23731720
12.

EMMA: a platform for consistent storage and efficient analysis of microarray data.

Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):135-46.

PMID:
14651856
13.

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.

Turro E, Bochkina N, Hein AM, Richardson S.

BMC Bioinformatics. 2007 Nov 12;8:439.

14.

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.

Wilson CL, Miller CJ.

Bioinformatics. 2005 Sep 15;21(18):3683-5. Epub 2005 Aug 2.

PMID:
16076888
15.

mu-CS: an extension of the TM4 platform to manage Affymetrix binary data.

Guzzi PH, Cannataro M.

BMC Bioinformatics. 2010 Jun 10;11:315. doi: 10.1186/1471-2105-11-315.

16.

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.

PMID:
17344240
17.

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID:
16030072
18.

affy--analysis of Affymetrix GeneChip data at the probe level.

Gautier L, Cope L, Bolstad BM, Irizarry RA.

Bioinformatics. 2004 Feb 12;20(3):307-15.

PMID:
14960456
19.

matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.

Huber W, Gentleman R.

Bioinformatics. 2004 Jul 10;20(10):1651-2. Epub 2004 Feb 26.

PMID:
14988118
20.

TMABoost: an integrated system for comprehensive management of tissue microarray data.

Demichelis F, Sboner A, Barbareschi M, Dell'Anna R.

IEEE Trans Inf Technol Biomed. 2006 Jan;10(1):19-27.

PMID:
16445246

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