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Items: 1 to 20 of 115

1.

Automating dChip: toward reproducible sharing of microarray data analysis.

Li C.

BMC Bioinformatics. 2008 May 8;9:231. doi: 10.1186/1471-2105-9-231.

2.

A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data.

Corradi L, Fato M, Porro I, Scaglione S, Torterolo L.

BMC Bioinformatics. 2008 Nov 13;9:480. doi: 10.1186/1471-2105-9-480.

3.

The dChip survival analysis module for microarray data.

Amin SB, Shah PK, Yan A, Adamia S, Minvielle S, Avet-Loiseau H, Munshi NC, Li C.

BMC Bioinformatics. 2011 Mar 9;12:72. doi: 10.1186/1471-2105-12-72.

4.

EDGE(3): a web-based solution for management and analysis of Agilent two color microarray experiments.

Vollrath AL, Smith AA, Craven M, Bradfield CA.

BMC Bioinformatics. 2009 Sep 4;10:280. doi: 10.1186/1471-2105-10-280.

5.

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.

Stokes TH, Torrance JT, Li H, Wang MD.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S18. doi: 10.1186/1471-2105-9-S6-S18.

6.

MiMiR--an integrated platform for microarray data sharing, mining and analysis.

Tomlinson C, Thimma M, Alexandrakis S, Castillo T, Dennis JL, Brooks A, Bradley T, Turnbull C, Blaveri E, Barton G, Chiba N, Maratou K, Soutter P, Aitman T, Game L.

BMC Bioinformatics. 2008 Sep 18;9:379. doi: 10.1186/1471-2105-9-379.

7.

The Stanford Microarray Database accommodates additional microarray platforms and data formats.

Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2.

8.

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46. doi: 10.1186/1471-2105-9-46.

9.

Microarray databases: standards and ontologies.

Stoeckert CJ Jr, Causton HC, Ball CA.

Nat Genet. 2002 Dec;32 Suppl:469-73. Review.

PMID:
12454640
10.

A suite of Perl modules for handling microarray data.

Morris JA, Gayther SA, Jacobs IJ, Jones C.

Bioinformatics. 2008 Apr 15;24(8):1102-3. doi: 10.1093/bioinformatics/btn085. Epub 2008 Mar 18.

PMID:
18353790
11.

Open source software for the analysis of microarray data.

Dudoit S, Gentleman RC, Quackenbush J.

Biotechniques. 2003 Mar;Suppl:45-51. Review.

PMID:
12664684
12.

The ArrayExpress gene expression database: a software engineering and implementation perspective.

Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A, Abeygunawardena N, Contrino S, Holloway E, Rocca-Serra P, Mukherjee G, Shojatalab M, Kapushesky M, Sansone SA, Farne A, Rayner T, Brazma A.

Bioinformatics. 2005 Apr 15;21(8):1495-501. Epub 2004 Nov 25.

PMID:
15564302
13.

A Grid-based solution for management and analysis of microarrays in distributed experiments.

Porro I, Torterolo L, Corradi L, Fato M, Papadimitropoulos A, Scaglione S, Schenone A, Viti F.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S7.

14.

Importing MAGE-ML format microarray data into BioConductor.

Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B.

Bioinformatics. 2004 Dec 12;20(18):3641-2. Epub 2004 Jul 15.

PMID:
15256416
15.

Software packages for quantitative microarray-based gene expression analysis.

Dresen IM, Hüsing J, Kruse E, Boes T, Jöckel KH.

Curr Pharm Biotechnol. 2003 Dec;4(6):417-37. Review.

PMID:
14683435
16.

MADGE: scalable distributed data management software for cDNA microarrays.

McIndoe RA, Lanzen A, Hurtz K.

Bioinformatics. 2003 Jan;19(1):87-9.

PMID:
12499297
17.

YAdumper: extracting and translating large information volumes from relational databases to structured flat files.

Fernández JM, Valencia A.

Bioinformatics. 2004 Oct 12;20(15):2455-7. Epub 2004 Apr 29.

PMID:
15117748
18.

SIMAGE: simulation of DNA-microarray gene expression data.

Albers CJ, Jansen RC, Kok J, Kuipers OP, van Hijum SA.

BMC Bioinformatics. 2006 Apr 13;7:205.

19.

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research.

Glez-Peña D, Díaz F, Hernández JM, Corchado JM, Fdez-Riverola F.

BMC Bioinformatics. 2009 Jun 18;10:187. doi: 10.1186/1471-2105-10-187.

20.

BioTorrents: a file sharing service for scientific data.

Langille MG, Eisen JA.

PLoS One. 2010 Apr 14;5(4):e10071. doi: 10.1371/journal.pone.0010071.

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