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Items: 1 to 20 of 100

1.

Lifting the veil on the transcriptome.

Callahan KP, Butler JS.

Genome Biol. 2008;9(4):218. doi: 10.1186/gb-2008-9-4-218.

2.

Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.

Kurihara Y, Matsui A, Hanada K, Kawashima M, Ishida J, Morosawa T, Tanaka M, Kaminuma E, Mochizuki Y, Matsushima A, Toyoda T, Shinozaki K, Seki M.

Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2453-8. doi: 10.1073/pnas.0808902106. Epub 2009 Jan 30.

3.

Nuclear stability and transcriptional directionality separate functionally distinct RNA species.

Andersson R, Refsing Andersen P, Valen E, Core LJ, Bornholdt J, Boyd M, Heick Jensen T, Sandelin A.

Nat Commun. 2014 Nov 12;5:5336. doi: 10.1038/ncomms6336.

PMID:
25387874
4.

An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis.

Zhang H, Tang K, Qian W, Duan CG, Wang B, Zhang H, Wang P, Zhu X, Lang Z, Yang Y, Zhu JK.

Mol Cell. 2014 May 8;54(3):418-30. doi: 10.1016/j.molcel.2014.03.019. Epub 2014 Apr 10.

5.

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.

Nat Struct Mol Biol. 2012 Aug;19(8):845-52. doi: 10.1038/nsmb.2345. Epub 2012 Jul 22.

6.

Plant science. Genomic-scale exchange of mRNA between a parasitic plant and its hosts.

Kim G, LeBlanc ML, Wafula EK, dePamphilis CW, Westwood JH.

Science. 2014 Aug 15;345(6198):808-11. doi: 10.1126/science.1253122.

7.

Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs.

MacIntosh GC, Wilkerson C, Green PJ.

Plant Physiol. 2001 Nov;127(3):765-76.

8.

Long noncoding RNAs responsive to Fusarium oxysporum infection in Arabidopsis thaliana.

Zhu QH, Stephen S, Taylor J, Helliwell CA, Wang MB.

New Phytol. 2014 Jan;201(2):574-84. doi: 10.1111/nph.12537. Epub 2013 Oct 7.

9.

Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.

Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA.

Cell. 2007 Dec 28;131(7):1340-53.

10.

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis.

Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD.

PLoS Genet. 2010 Sep 30;6(9):e1001141. doi: 10.1371/journal.pgen.1001141.

11.

Connecting the dots of RNA-directed DNA methylation in Arabidopsis thaliana.

Costa-Nunes P, Vitins A, Pontes O.

Chromosome Res. 2014 Jun;22(2):225-40. doi: 10.1007/s10577-014-9425-9. Review.

PMID:
24846724
12.

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM.

Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24.

PMID:
24270811
13.

Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome.

Li F, Zheng Q, Vandivier LE, Willmann MR, Chen Y, Gregory BD.

Plant Cell. 2012 Nov;24(11):4346-59. doi: 10.1105/tpc.112.104232. Epub 2012 Nov 13.

14.

Meiotic, cryptic, and stable unannotated transcripts: noncoding RNAs add to the epigenetic tool box controlling meiotic development.

Strich R.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):891-2. doi: 10.1073/pnas.1018013108. Epub 2011 Jan 3. No abstract available.

15.

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays.

Zeller G, Henz SR, Widmer CK, Sachsenberg T, R├Ątsch G, Weigel D, Laubinger S.

Plant J. 2009 Jun;58(6):1068-82. doi: 10.1111/j.1365-313X.2009.03835.x. Epub 2009 Feb 13. Erratum in: Plant J. 2009 Dec;60(5):929.

16.

Discovery and annotation of long noncoding RNAs.

Mattick JS, Rinn JL.

Nat Struct Mol Biol. 2015 Jan;22(1):5-7. doi: 10.1038/nsmb.2942.

PMID:
25565026
17.

Noncoding RNA transcription beyond annotated genes.

Carninci P, Hayashizaki Y.

Curr Opin Genet Dev. 2007 Apr;17(2):139-44. Epub 2007 Feb 20. Review.

PMID:
17317145
18.

Noncoding RNAs in mental retardation.

Szulwach KE, Jin P, Alisch RS.

Clin Genet. 2009 Mar;75(3):209-19. doi: 10.1111/j.1399-0004.2008.01134.x. Epub 2009 Jan 20. Review.

19.

CDKF;1 and CDKD protein kinases regulate phosphorylation of serine residues in the C-terminal domain of Arabidopsis RNA polymerase II.

Hajheidari M, Farrona S, Huettel B, Koncz Z, Koncz C.

Plant Cell. 2012 Apr;24(4):1626-42. doi: 10.1105/tpc.112.096834. Epub 2012 Apr 30.

20.

Activity and roles of Arabidopsis thaliana XRN family exoribonucleases in noncoding RNA pathways.

Kurihara Y.

J Plant Res. 2017 Jan;130(1):25-31. doi: 10.1007/s10265-016-0887-z. Epub 2016 Dec 17. Review.

PMID:
27988817

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