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Items: 1 to 20 of 97

1.

A hidden feedback in signaling cascades is revealed.

Ventura AC, Sepulchre JA, Merajver SD.

PLoS Comput Biol. 2008 Mar 21;4(3):e1000041. doi: 10.1371/journal.pcbi.1000041.

2.

Positional information generated by spatially distributed signaling cascades.

Muñoz-García J, Neufeld Z, Kholodenko BN.

PLoS Comput Biol. 2009 Mar;5(3):e1000330. doi: 10.1371/journal.pcbi.1000330. Epub 2009 Mar 20.

3.

Goldbeter-Koshland model for open signaling cascades: a mathematical study.

Li Y, Srividhya J.

J Math Biol. 2010 Dec;61(6):781-803. doi: 10.1007/s00285-009-0322-3. Epub 2010 Jan 6.

PMID:
20052474
4.

Open cascades as simple solutions to providing ultrasensitivity and adaptation in cellular signaling.

Srividhya J, Li Y, Pomerening JR.

Phys Biol. 2011 Aug;8(4):046005. doi: 10.1088/1478-3975/8/4/046005. Epub 2011 May 12.

5.

Quantitative analysis of signaling networks.

Sauro HM, Kholodenko BN.

Prog Biophys Mol Biol. 2004 Sep;86(1):5-43. Review.

PMID:
15261524
6.

Functions of bifans in context of multiple regulatory motifs in signaling networks.

Lipshtat A, Purushothaman SP, Iyengar R, Ma'ayan A.

Biophys J. 2008 Apr 1;94(7):2566-79. doi: 10.1529/biophysj.107.116673. Epub 2008 Jan 4.

7.

Effects of sequestration on signal transduction cascades.

Blüthgen N, Bruggeman FJ, Legewie S, Herzel H, Westerhoff HV, Kholodenko BN.

FEBS J. 2006 Mar;273(5):895-906.

8.

Operating regimes of signaling cycles: statics, dynamics, and noise filtering.

Gomez-Uribe C, Verghese GC, Mirny LA.

PLoS Comput Biol. 2007 Dec;3(12):e246.

9.

Dynamics robustness of cascading systems.

Young JT, Hatakeyama TS, Kaneko K.

PLoS Comput Biol. 2017 Mar 13;13(3):e1005434. doi: 10.1371/journal.pcbi.1005434. eCollection 2017 Mar.

10.

On sensitivity amplification in intracellular signaling cascades.

Rácz E, Slepchenko BM.

Phys Biol. 2008 Jul 29;5(3):036004. doi: 10.1088/1478-3975/5/3/036004.

11.

Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways.

Chiam KH, Tan CM, Bhargava V, Rajagopal G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Nov;74(5 Pt 1):051910. Epub 2006 Nov 14.

PMID:
17279942
12.

Noise propagation and signaling sensitivity in biological networks: a role for positive feedback.

Hornung G, Barkai N.

PLoS Comput Biol. 2008 Jan;4(1):e8. doi: 10.1371/journal.pcbi.0040008. Epub 2007 Dec 5.

13.

Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation.

Ciliberto A, Capuani F, Tyson JJ.

PLoS Comput Biol. 2007 Mar 16;3(3):e45.

14.

Boolean dynamics of biological networks with multiple coupled feedback loops.

Kwon YK, Cho KH.

Biophys J. 2007 Apr 15;92(8):2975-81. Epub 2007 Jan 26.

15.

Coherent coupling of feedback loops: a design principle of cell signaling networks.

Kwon YK, Cho KH.

Bioinformatics. 2008 Sep 1;24(17):1926-32. doi: 10.1093/bioinformatics/btn337. Epub 2008 Jul 2.

PMID:
18596076
16.

Retroactive signaling in short signaling pathways.

Sepulchre JA, Merajver SD, Ventura AC.

PLoS One. 2012;7(7):e40806. doi: 10.1371/journal.pone.0040806. Epub 2012 Jul 26.

17.

A joint model of regulatory and metabolic networks.

Yeang CH, Vingron M.

BMC Bioinformatics. 2006 Jul 4;7:332.

18.

How robust are switches in intracellular signaling cascades?

Blüthgen N, Herzel H.

J Theor Biol. 2003 Dec 7;225(3):293-300.

PMID:
14604583
19.

A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts.

Blüthgen N, Legewie S, Kielbasa SM, Schramme A, Tchernitsa O, Keil J, Solf A, Vingron M, Schäfer R, Herzel H, Sers C.

FEBS J. 2009 Feb;276(4):1024-35. doi: 10.1111/j.1742-4658.2008.06846.x. Epub 2009 Jan 12.

20.

A decompositional approach to parameter estimation in pathway modeling: a case study of the Akt and MAPK pathways and their crosstalk.

Koh G, Teong HF, Clément MV, Hsu D, Thiagarajan PS.

Bioinformatics. 2006 Jul 15;22(14):e271-80.

PMID:
16873482

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