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Items: 1 to 20 of 106

1.

MicroRNAs and the advent of vertebrate morphological complexity.

Heimberg AM, Sempere LF, Moy VN, Donoghue PC, Peterson KJ.

Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):2946-50. doi: 10.1073/pnas.0712259105. Epub 2008 Feb 14.

2.

Simultaneous expansions of microRNAs and protein-coding genes by gene/genome duplications in early vertebrates.

Gu X, Su Z, Huang Y.

J Exp Zool B Mol Dev Evol. 2009 May 15;312B(3):164-70. doi: 10.1002/jez.b.21273.

PMID:
19214983
3.

Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution.

Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L.

Evol Dev. 2009 Jan-Feb;11(1):41-9. doi: 10.1111/j.1525-142X.2008.00301.x.

PMID:
19196332
4.

The deep evolution of metazoan microRNAs.

Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ.

Evol Dev. 2009 Jan-Feb;11(1):50-68. doi: 10.1111/j.1525-142X.2008.00302.x.

PMID:
19196333
5.

Identification and characterization of novel amphioxus microRNAs by Solexa sequencing.

Chen X, Li Q, Wang J, Guo X, Jiang X, Ren Z, Weng C, Sun G, Wang X, Liu Y, Ma L, Chen JY, Wang J, Zen K, Zhang J, Zhang CY.

Genome Biol. 2009;10(7):R78. doi: 10.1186/gb-2009-10-7-r78. Epub 2009 Jul 17.

6.

The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint.

Sempere LF, Cole CN, McPeek MA, Peterson KJ.

J Exp Zool B Mol Dev Evol. 2006 Nov 15;306(6):575-88.

PMID:
16838302
8.

Evolution of the let-7 microRNA family.

Hertel J, Bartschat S, Wintsche A, Otto C; Students of the Bioinformatics Computer Lab, Stadler PF.

RNA Biol. 2012 Mar;9(3):231-41. doi: 10.4161/rna.18974. Epub 2012 Mar 1.

9.

Pleiotropic constraints, expression level, and the evolution of miRNA sequences.

Jovelin R.

J Mol Evol. 2013 Dec;77(5-6):206-20. doi: 10.1007/s00239-013-9588-6. Epub 2013 Oct 8.

10.

The expansion of the metazoan microRNA repertoire.

Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF; Students of Bioinformatics Computer Labs 2004 and 2005.

BMC Genomics. 2006 Feb 15;7:25.

11.

The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW.

Genome Res. 2008 Jul;18(7):1100-11. doi: 10.1101/gr.073676.107. Epub 2008 Jun 18. Erratum in: Genome Res. 2008 Aug;18(8):1380.

12.

Comparative genomic analysis reveals evolutionary characteristics and patterns of microRNA clusters in vertebrates.

Sun J, Gao B, Zhou M, Wang ZZ, Zhang F, Deng JE, Li X.

Gene. 2013 Jan 10;512(2):383-91. doi: 10.1016/j.gene.2012.09.102. Epub 2012 Oct 12.

PMID:
23063939
13.

Evolution of microRNA diversity and regulation in animals.

Berezikov E.

Nat Rev Genet. 2011 Nov 18;12(12):846-60. doi: 10.1038/nrg3079. Review.

PMID:
22094948
14.

Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolution.

Horton AC, Mahadevan NR, Ruvinsky I, Gibson-Brown JJ.

J Exp Zool B Mol Dev Evol. 2003 Oct 15;299(1):41-53.

PMID:
14508816
15.

Evidence for a microRNA expansion in the bilaterian ancestor.

Prochnik SE, Rokhsar DS, Aboobaker AA.

Dev Genes Evol. 2007 Jan;217(1):73-7. Epub 2006 Nov 14.

PMID:
17103184
16.

Comparison of Pax1/9 locus reveals 500-Myr-old syntenic block and evolutionary conserved noncoding regions.

Wang W, Zhong J, Su B, Zhou Y, Wang YQ.

Mol Biol Evol. 2007 Mar;24(3):784-91. Epub 2006 Dec 20.

PMID:
17182894
17.

The evolution of core proteins involved in microRNA biogenesis.

Murphy D, Dancis B, Brown JR.

BMC Evol Biol. 2008 Mar 25;8:92. doi: 10.1186/1471-2148-8-92.

18.

Computational prediction of amphioxus microRNA genes and their targets.

Luo Y, Zhang S.

Gene. 2009 Jan 1;428(1-2):41-6. doi: 10.1016/j.gene.2008.09.022. Epub 2008 Oct 1.

PMID:
18930793
19.

Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.

Premzl M, Gready JE, Jermiin LS, Simonic T, Marshall Graves JA.

Mol Biol Evol. 2004 Dec;21(12):2210-31. Epub 2004 Sep 1.

PMID:
15342797
20.

MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.

Yuan Z, Sun X, Liu H, Xie J.

PLoS One. 2011 Mar 16;6(3):e17666. doi: 10.1371/journal.pone.0017666.

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