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Items: 1 to 20 of 190

1.

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

Quinlan AR, Stewart DA, Strömberg MP, Marth GT.

Nat Methods. 2008 Feb;5(2):179-81. doi: 10.1038/nmeth.1172.

PMID:
18193056
2.

BNTagger: improved tagging SNP selection using Bayesian networks.

Lee PH, Shatkay H.

Bioinformatics. 2006 Jul 15;22(14):e211-9.

3.

SEAN: SNP prediction and display program utilizing EST sequence clusters.

Huntley D, Baldo A, Johri S, Sergot M.

Bioinformatics. 2006 Feb 15;22(4):495-6.

4.

Quantification of single nucleotide polymorphisms by automated DNA sequencing.

Qiu P, Soder GJ, Sanfiorenzo VJ, Wang L, Greene JR, Fritz MA, Cai XY.

Biochem Biophys Res Commun. 2003 Sep 19;309(2):331-8.

PMID:
12951054
5.

Genome resequencing and genetic variation.

Stratton M.

Nat Biotechnol. 2008 Jan;26(1):65-6. doi: 10.1038/nbt0108-65. Review. No abstract available.

PMID:
18183021
6.

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology.

Mitani Y, Lezhava A, Kawai Y, Kikuchi T, Oguchi-Katayama A, Kogo Y, Itoh M, Miyagi T, Takakura H, Hoshi K, Kato C, Arakawa T, Shibata K, Fukui K, Masui R, Kuramitsu S, Kiyotani K, Chalk A, Tsunekawa K, Murakami M, Kamataki T, Oka T, Shimada H, Cizdziel PE, Hayashizaki Y.

Nat Methods. 2007 Mar;4(3):257-62.

PMID:
17322893
7.

SOP3: a web-based tool for selection of oligonucleotide primers for single nucleotide polymorphism analysis by Pyrosequencing.

Alexander AM, Pecoraro C, Styche A, Rudert WA, Benos PV, Ringquist S, Trucco M.

Biotechniques. 2005 Jan;38(1):87-94.

8.

Automated band mapping in electrophoretic gel images using background information.

Zerr T, Henikoff S.

Nucleic Acids Res. 2005 May 13;33(9):2806-12.

9.

Automated identification of single nucleotide polymorphisms from sequencing data.

Takahashi M, Matsuda F, Margetic N, Lathrop M.

J Bioinform Comput Biol. 2003 Jul;1(2):253-65.

PMID:
15290772
10.

ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays.

Rigaill G, Hupé P, Almeida A, La Rosa P, Meyniel JP, Decraene C, Barillot E.

Bioinformatics. 2008 Mar 15;24(6):768-74. doi: 10.1093/bioinformatics/btn048.

11.

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

Hong H, Su Z, Ge W, Shi L, Perkins R, Fang H, Xu J, Chen JJ, Han T, Kaput J, Fuscoe JC, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S17. doi: 10.1186/1471-2105-9-S9-S17.

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14.

Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Li H, Ruan J, Durbin R.

Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108.

15.
16.

Automatic scoring and quality assessment using accuracy bounds for FP-TDI SNP genotyping data.

Kschischo M, Kern R, Gieger C, Steinhauser M, Tolle R.

Appl Bioinformatics. 2005;4(2):75-84.

PMID:
16128609
17.

A new method for SNP discovery.

Xu JY, Xu GB, Chen SL.

Biotechniques. 2009 Mar;46(3):201-8. doi: 10.2144/000113075.

18.

2SNP: scalable phasing based on 2-SNP haplotypes.

Brinza D, Zelikovsky A.

Bioinformatics. 2006 Feb 1;22(3):371-3.

19.

SNP discovery using advanced algorithms and neural networks.

Unneberg P, Strömberg M, Sterky F.

Bioinformatics. 2005 May 15;21(10):2528-30.

20.

Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows.

Roberts A, McMillan L, Wang W, Parker J, Rusyn I, Threadgill D.

Bioinformatics. 2007 Jul 1;23(13):i401-7.

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