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Items: 1 to 20 of 105

1.

Understanding protein evolution: from protein physics to Darwinian selection.

Zeldovich KB, Shakhnovich EI.

Annu Rev Phys Chem. 2008;59:105-27. Review.

PMID:
17937598
2.

Missense meanderings in sequence space: a biophysical view of protein evolution.

DePristo MA, Weinreich DM, Hartl DL.

Nat Rev Genet. 2005 Sep;6(9):678-87. Review.

PMID:
16074985
3.

Signatures of protein biophysics in coding sequence evolution.

Wilke CO, Drummond DA.

Curr Opin Struct Biol. 2010 Jun;20(3):385-9. doi: 10.1016/j.sbi.2010.03.004. Epub 2010 Apr 13. Review.

4.

An integrated view of protein evolution.

Pál C, Papp B, Lercher MJ.

Nat Rev Genet. 2006 May;7(5):337-48. Review.

PMID:
16619049
5.

The emergence of scaling in sequence-based physical models of protein evolution.

Deeds EJ, Shakhnovich EI.

Biophys J. 2005 Jun;88(6):3905-11. Epub 2005 Apr 1.

6.

Evolution and physics in comparative protein structure modeling.

Fiser A, Feig M, Brooks CL 3rd, Sali A.

Acc Chem Res. 2002 Jun;35(6):413-21. Review.

PMID:
12069626
7.

A biological cosmos of parallel universes: does protein structural plasticity facilitate evolution?

Meier S, Ozbek S.

Bioessays. 2007 Nov;29(11):1095-104. Review.

PMID:
17935152
8.

Protein stability imposes limits on organism complexity and speed of molecular evolution.

Zeldovich KB, Chen P, Shakhnovich EI.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16152-7. Epub 2007 Oct 3.

9.

Sequence divergence, functional constraint, and selection in protein evolution.

Fay JC, Wu CI.

Annu Rev Genomics Hum Genet. 2003;4:213-35. Review.

PMID:
14527302
10.

A structure-centric view of protein evolution, design, and adaptation.

Deeds EJ, Shakhnovich EI.

Adv Enzymol Relat Areas Mol Biol. 2007;75:133-91, xi-xii. Review.

PMID:
17124867
11.
12.

The structure of the protein universe and genome evolution.

Koonin EV, Wolf YI, Karev GP.

Nature. 2002 Nov 14;420(6912):218-23. Review.

PMID:
12432406
13.

Protein structure and folding: a new start.

Berezovsky IN, Trifonov EN.

J Biomol Struct Dyn. 2001 Dec;19(3):397-403. Review.

PMID:
11790139
14.

Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes.

Studer RA, Dessailly BH, Orengo CA.

Biochem J. 2013 Feb 1;449(3):581-94. doi: 10.1042/BJ20121221. Review.

PMID:
23301657
15.

Developing and analyzing idealized models for molecular recognition.

Behringer H, Bogner T, Polotsky A, Degenhard A, Schmid F.

J Biotechnol. 2007 Apr 30;129(2):268-78. Epub 2007 Feb 11. Review.

PMID:
17368607
16.
17.

In vivo molecular evolution reveals biophysical origins of organismal fitness.

Couñago R, Chen S, Shamoo Y.

Mol Cell. 2006 May 19;22(4):441-9.

18.

Evolution of protein structural classes and protein sequence families.

Choi IG, Kim SH.

Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14056-61. Epub 2006 Sep 7.

19.

The Yin and Yang of anti-Darwinian epigenetics and Darwinian genetics.

Damiani G.

Riv Biol. 2007 Sep-Dec;100(3):361-402. Review.

PMID:
18278738
20.

Sequence and structure space model of protein divergence driven by point mutations.

Arodź T, Płonka PM.

J Theor Biol. 2013 Aug 7;330:1-8. doi: 10.1016/j.jtbi.2013.03.015. Epub 2013 Mar 28.

PMID:
23541620

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