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Items: 1 to 20 of 254

1.

Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.

PMID:
17846036
2.

Multiple sequence alignment with the Clustal series of programs.

Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD.

Nucleic Acids Res. 2003 Jul 1;31(13):3497-500.

3.

Sfixem--graphical sequence feature display in Java.

Chalk AM, Wennerberg M, Sonnhammer EL.

Bioinformatics. 2004 Oct 12;20(15):2488-90. Epub 2004 Apr 15.

PMID:
15087316
4.

Protein structure topological comparison, discovery and matching service.

Torrance GM, Gilbert DR, Michalopoulos I, Westhead DW.

Bioinformatics. 2005 May 15;21(10):2537-8. Epub 2005 Mar 1.

PMID:
15741246
5.

RALEE--RNA ALignment editor in Emacs.

Griffiths-Jones S.

Bioinformatics. 2005 Jan 15;21(2):257-9. Epub 2004 Sep 17.

PMID:
15377506
6.

MAGOS: multiple alignment and modelling server.

Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deléage G, Poch O.

Bioinformatics. 2006 Sep 1;22(17):2164-5. Epub 2006 Jul 4.

PMID:
16820425
7.

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG.

Nucleic Acids Res. 1997 Dec 15;25(24):4876-82.

8.

Open source clustering software.

de Hoon MJ, Imoto S, Nolan J, Miyano S.

Bioinformatics. 2004 Jun 12;20(9):1453-4. Epub 2004 Feb 10.

PMID:
14871861
9.

W2H: WWW interface to the GCG sequence analysis package.

Senger M, Flores T, Glatting K, Ernst P, Hotz-Wagenblatt A, Suhai S.

Bioinformatics. 1998 Jun;14(5):452-7.

PMID:
9682058
10.

Rainbow: a toolbox for phylogenetic supertree construction and analysis.

Chen D, Eulenstein O, Fernández-Baca D.

Bioinformatics. 2004 Nov 1;20(16):2872-3. Epub 2004 May 14.

PMID:
15145807
11.

CAPS: coevolution analysis using protein sequences.

Fares MA, McNally D.

Bioinformatics. 2006 Nov 15;22(22):2821-2. Epub 2006 Sep 27.

PMID:
17005535
12.

APDB: a web server to evaluate the accuracy of sequence alignments using structural information.

Armougom F, Poirot O, Moretti S, Higgins DG, Bucher P, Keduas V, Notredame C.

Bioinformatics. 2006 Oct 1;22(19):2439-40.

PMID:
17032685
13.

POAVIZ: a Partial order multiple sequence alignment visualizer.

Grasso C, Quist M, Ke K, Lee C.

Bioinformatics. 2003 Jul 22;19(11):1446-8.

PMID:
12874062
14.

CLANS: a Java application for visualizing protein families based on pairwise similarity.

Frickey T, Lupas A.

Bioinformatics. 2004 Dec 12;20(18):3702-4. Epub 2004 Jul 29.

PMID:
15284097
15.

ESPript: analysis of multiple sequence alignments in PostScript.

Gouet P, Courcelle E, Stuart DI, Métoz F.

Bioinformatics. 1999 Apr;15(4):305-8.

PMID:
10320398
16.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

17.

ProMSED: protein multiple sequence editor for Windows 3.11/95.

Frolov AS, Pika IS, Eroshkin AM.

Comput Appl Biosci. 1997 Jun;13(3):243-8.

PMID:
9183528
18.

GenomeDiagram: a python package for the visualization of large-scale genomic data.

Pritchard L, White JA, Birch PR, Toth IK.

Bioinformatics. 2006 Mar 1;22(5):616-7. Epub 2005 Dec 23.

PMID:
16377612
19.

TANDEM: matching proteins with tandem mass spectra.

Craig R, Beavis RC.

Bioinformatics. 2004 Jun 12;20(9):1466-7. Epub 2004 Feb 19.

PMID:
14976030
20.

Adding some SPICE to DAS.

Prlić A, Down TA, Hubbard TJ.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii40-1.

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