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Items: 1 to 20 of 80

1.

Origin of phenotypes: genes and transcripts.

Gingeras TR.

Genome Res. 2007 Jun;17(6):682-90. Review.

2.
4.

Critical evaluation of the FANTOM3 non-coding RNA transcripts.

Nordström KJ, Mirza MA, Almén MS, Gloriam DE, Fredriksson R, Schiöth HB.

Genomics. 2009 Sep;94(3):169-76. doi: 10.1016/j.ygeno.2009.05.012. Epub 2009 Jun 6.

5.

Non-coding RNA.

Mattick JS, Makunin IV.

Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R17-29. Review.

PMID:
16651366
6.

Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes.

Willingham AT, Dike S, Cheng J, Manak JR, Bell I, Cheung E, Drenkow J, Dumais E, Duttagupta R, Ganesh M, Ghosh S, Helt G, Nix D, Piccolboni A, Sementchenko V, Tammana H, Kapranov P; ENCODE Genes And Transcripts Group, Gingeras TR.

Cold Spring Harb Symp Quant Biol. 2006;71:101-10.

PMID:
17480199
7.

Constructing the landscape of the mammalian transcriptome.

Carninci P.

J Exp Biol. 2007 May;210(Pt 9):1497-506.

8.

Unexpected complexity of the budding yeast transcriptome.

Ito T, Miura F, Onda M.

IUBMB Life. 2008 Dec;60(12):775-81. doi: 10.1002/iub.121. Review.

9.

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.

Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, Sementchenko V, Piccolboni A, Bekiranov S, Bailey DK, Ganesh M, Ghosh S, Bell I, Gerhard DS, Gingeras TR.

Science. 2005 May 20;308(5725):1149-54. Epub 2005 Mar 24.

10.

Noncoding but nonexpendable: transcriptional regulation by large noncoding RNA in eukaryotes.

Yazgan O, Krebs JE.

Biochem Cell Biol. 2007 Aug;85(4):484-96. Review.

PMID:
17713583
11.

Two mammalian genes transcribed from opposite strands of the same DNA locus.

Adelman JP, Bond CT, Douglass J, Herbert E.

Science. 1987 Mar 20;235(4795):1514-7.

PMID:
3547652
12.

RNA maps reveal new RNA classes and a possible function for pervasive transcription.

Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR.

Science. 2007 Jun 8;316(5830):1484-8. Epub 2007 May 17.

13.

Finding noncoding RNA transcripts from low abundance expressed sequence tags.

Xue C, Li F, Li F.

Cell Res. 2008 Jun;18(6):695-700. doi: 10.1038/cr.2008.59.

14.

Conserved alternative and antisense transcripts at the programmed cell death 2 locus.

Mihola O, Forejt J, Trachtulec Z.

BMC Genomics. 2007 Jan 18;8:20.

15.

Antisense transcription in the mammalian transcriptome.

Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C; RIKEN Genome Exploration Research Group; Genome Science Group (Genome Network Project Core Group); FANTOM Consortium.

Science. 2005 Sep 2;309(5740):1564-6.

16.

DLEU2 encodes an antisense RNA for the putative bicistronic RFP2/LEU5 gene in humans and mouse.

Corcoran MM, Hammarsund M, Zhu C, Lerner M, Kapanadze B, Wilson B, Larsson C, Forsberg L, Ibbotson RE, Einhorn S, Oscier DG, Grandér D, Sangfelt O.

Genes Chromosomes Cancer. 2004 Aug;40(4):285-97.

PMID:
15188451
17.

Complex organisation and structure of the ghrelin antisense strand gene GHRLOS, a candidate non-coding RNA gene.

Seim I, Carter SL, Herington AC, Chopin LK.

BMC Mol Biol. 2008 Oct 28;9:95. doi: 10.1186/1471-2199-9-95.

18.

What is a gene, post-ENCODE? History and updated definition.

Gerstein MB, Bruce C, Rozowsky JS, Zheng D, Du J, Korbel JO, Emanuelsson O, Zhang ZD, Weissman S, Snyder M.

Genome Res. 2007 Jun;17(6):669-81. Review.

19.

Transcriptome complexity in a genome-reduced bacterium.

Güell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, Michalodimitrakis K, Yamada T, Arumugam M, Doerks T, Kühner S, Rode M, Suyama M, Schmidt S, Gavin AC, Bork P, Serrano L.

Science. 2009 Nov 27;326(5957):1268-71. doi: 10.1126/science.1176951.

20.

Overlapping genes in vertebrate genomes.

Makalowska I, Lin CF, Makalowski W.

Comput Biol Chem. 2005 Feb;29(1):1-12. Review.

PMID:
15680581

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