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Items: 1 to 20 of 93

1.

Computational prediction of atomic structures of helical membrane proteins aided by EM maps.

Kovacs JA, Yeager M, Abagyan R.

Biophys J. 2007 Sep 15;93(6):1950-9. Epub 2007 May 11.

2.

Novel scoring function for modeling structures of oligomers of transmembrane alpha-helices.

Park Y, Elsner M, Staritzbichler R, Helms V.

Proteins. 2004 Nov 15;57(3):577-85.

PMID:
15382237
3.
4.
5.

Theoretical and computational models of biological ion channels.

Roux B, Allen T, Bernèche S, Im W.

Q Rev Biophys. 2004 Feb;37(1):15-103. Review.

PMID:
17390604
6.

Toward high-resolution prediction and design of transmembrane helical protein structures.

Barth P, Schonbrun J, Baker D.

Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15682-7. Epub 2007 Sep 28. Erratum in: Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20635.

7.

Emerging issues of connexin channels: biophysics fills the gap.

Harris AL.

Q Rev Biophys. 2001 Aug;34(3):325-472. Review. Erratum in: Q Rev Biophys 2002 Feb;35(1):109.

PMID:
11838236
9.

Low-resolution structure refinement in electron microscopy.

Chen JZ, Fürst J, Chapman MS, Grigorieff N.

J Struct Biol. 2003 Oct-Nov;144(1-2):144-51.

PMID:
14643217
10.

Rotational orientation of transmembrane alpha-helices in bacteriorhodopsin. A neutron diffraction study.

Samatey FA, Zaccaï G, Engelman DM, Etchebest C, Popot JL.

J Mol Biol. 1994 Mar 4;236(4):1093-104.

PMID:
8120889
11.

Modeling dimerizations of transmembrane proteins using Brownian dynamics simulations.

Cui M, Mezei M, Osman R.

J Comput Aided Mol Des. 2008 Aug;22(8):553-61. doi: 10.1007/s10822-008-9198-3. Epub 2008 Mar 13.

PMID:
18338226
12.

An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data.

Fleishman SJ, Harrington S, Friesner RA, Honig B, Ben-Tal N.

Biophys J. 2004 Nov;87(5):3448-59. Epub 2004 Aug 31.

13.
14.

Energetics of the native and non-native states of the glycophorin transmembrane helix dimer.

Mottamal M, Zhang J, Lazaridis T.

Proteins. 2006 Mar 1;62(4):996-1009.

PMID:
16395713
15.

Structures of membrane proteins.

Kennedy SJ.

J Membr Biol. 1978 Sep 19;42(3):265-79. Review.

PMID:
359814
17.

Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching.

Adams PD, Engelman DM, Brünger AT.

Proteins. 1996 Nov;26(3):257-61. Erratum in: Proteins 1997 Jan;27(1):132.

PMID:
8953647
18.

Folding elastic transmembrane helices to fit in a low-resolution image by electron microscopy.

Ueno Y, Kawasaki K, Saito O, Arai M, Suwa M.

J Bioinform Comput Biol. 2011 Dec;9 Suppl 1:37-50.

PMID:
22144252
19.

Helical shifts generate two distinct conformers in the atomic resolution structure of the CheA phosphotransferase domain from Thermotoga maritima.

Quezada CM, Gradinaru C, Simon MI, Bilwes AM, Crane BR.

J Mol Biol. 2004 Aug 27;341(5):1283-94.

PMID:
15321722
20.

Insights into the recognition and association of transmembrane alpha-helices. The free energy of alpha-helix dimerization in glycophorin A.

Hénin J, Pohorille A, Chipot C.

J Am Chem Soc. 2005 Jun 15;127(23):8478-84. Erratum in: J Am Chem Soc. 2010 Jul 14;132(27):9510.

PMID:
15941282

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