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Items: 1 to 20 of 106

1.
2.

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems.

Lange SJ, Alkhnbashi OS, Rose D, Will S, Backofen R.

Nucleic Acids Res. 2013 Sep;41(17):8034-44. doi: 10.1093/nar/gkt606. Epub 2013 Jul 17.

3.

[Comparative analysis of clustered regularly interspaced short palindromic repeats (CRISPRs) loci in the genomes of halophilic archaea].

Zhang F, Zhang B, Xiang H, Hu S.

Wei Sheng Wu Xue Bao. 2009 Nov;49(11):1445-53. Chinese.

PMID:
20112671
4.

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes.

Al-Attar S, Westra ER, van der Oost J, Brouns SJ.

Biol Chem. 2011 Apr;392(4):277-89. doi: 10.1515/BC.2011.042. Epub 2011 Feb 7. Review.

PMID:
21294681
5.

CRISPR/Cas, the immune system of bacteria and archaea.

Horvath P, Barrangou R.

Science. 2010 Jan 8;327(5962):167-70. doi: 10.1126/science.1179555. Review.

PMID:
20056882
6.

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

Haft DH, Selengut J, Mongodin EF, Nelson KE.

PLoS Comput Biol. 2005 Nov;1(6):e60. Epub 2005 Nov 11.

7.

Viral diversity threshold for adaptive immunity in prokaryotes.

Weinberger AD, Wolf YI, Lobkovsky AE, Gilmore MS, Koonin EV.

MBio. 2012 Dec 4;3(6):e00456-12. doi: 10.1128/mBio.00456-12.

8.

Diverse CRISPRs evolving in human microbiomes.

Rho M, Wu YW, Tang H, Doak TG, Ye Y.

PLoS Genet. 2012;8(6):e1002441. doi: 10.1371/journal.pgen.1002441. Epub 2012 Jun 13.

9.

CRISPI: a CRISPR interactive database.

Rousseau C, Gonnet M, Le Romancer M, Nicolas J.

Bioinformatics. 2009 Dec 15;25(24):3317-8. doi: 10.1093/bioinformatics/btp586. Epub 2009 Oct 21.

10.

Evolution and classification of the CRISPR-Cas systems.

Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV.

Nat Rev Microbiol. 2011 Jun;9(6):467-77. doi: 10.1038/nrmicro2577. Epub 2011 May 9. Review.

11.

CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation.

Bhaya D, Davison M, Barrangou R.

Annu Rev Genet. 2011;45:273-97. doi: 10.1146/annurev-genet-110410-132430. Review.

PMID:
22060043
12.

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Sorek R, Kunin V, Hugenholtz P.

Nat Rev Microbiol. 2008 Mar;6(3):181-6. Review.

PMID:
18157154
13.

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea.

Marraffini LA, Sontheimer EJ.

Nat Rev Genet. 2010 Mar;11(3):181-90. doi: 10.1038/nrg2749. Review.

14.

Identification of genes that are associated with DNA repeats in prokaryotes.

Jansen R, Embden JD, Gaastra W, Schouls LM.

Mol Microbiol. 2002 Mar;43(6):1565-75.

15.

Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria.

Chakraborty S, Snijders AP, Chakravorty R, Ahmed M, Tarek AM, Hossain MA.

Mol Phylogenet Evol. 2010 Sep;56(3):878-87. doi: 10.1016/j.ympev.2010.05.020. Epub 2010 May 23.

PMID:
20580935
16.

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.

Alkhnbashi OS, Costa F, Shah SA, Garrett RA, Saunders SJ, Backofen R.

Bioinformatics. 2014 Sep 1;30(17):i489-96. doi: 10.1093/bioinformatics/btu459.

17.

[Comparative genomics and evolutionary analysis of CRISPR loci in acetic acid bacteria].

Kai X, Xinle L, Yudong L.

Yi Chuan. 2015 Dec;37(12):1242-50. doi: 10.16288/j.yczz.15-244. Chinese.

PMID:
26704949
18.

Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE).

Lintner NG, Kerou M, Brumfield SK, Graham S, Liu H, Naismith JH, Sdano M, Peng N, She Q, CopiƩ V, Young MJ, White MF, Lawrence CM.

J Biol Chem. 2011 Jun 17;286(24):21643-56. doi: 10.1074/jbc.M111.238485. Epub 2011 Apr 20.

19.

Self versus non-self discrimination during CRISPR RNA-directed immunity.

Marraffini LA, Sontheimer EJ.

Nature. 2010 Jan 28;463(7280):568-71. doi: 10.1038/nature08703. Epub 2010 Jan 13.

20.

RNA-guided genetic silencing systems in bacteria and archaea.

Wiedenheft B, Sternberg SH, Doudna JA.

Nature. 2012 Feb 15;482(7385):331-8. doi: 10.1038/nature10886. Review.

PMID:
22337052

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