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Items: 1 to 20 of 206

1.

Role of RNA polymerase IV in plant small RNA metabolism.

Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4536-41. Epub 2007 Mar 5.

2.

Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana.

Sasaki T, Lee TF, Liao WW, Naumann U, Liao JL, Eun C, Huang YY, Fu JL, Chen PY, Meyers BC, Matzke AJ, Matzke M.

Plant J. 2014 Jul;79(1):127-38. doi: 10.1111/tpj.12545. Epub 2014 Jun 13.

3.

RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway.

Pontes O, Costa-Nunes P, Vithayathil P, Pikaard CS.

Mol Plant. 2009 Jul;2(4):700-10. doi: 10.1093/mp/ssp006. Epub 2009 Mar 24.

4.

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.

Zhang X, Xia J, Lii YE, Barrera-Figueroa BE, Zhou X, Gao S, Lu L, Niu D, Chen Z, Leung C, Wong T, Zhang H, Guo J, Li Y, Liu R, Liang W, Zhu JK, Zhang W, Jin H.

Genome Biol. 2012;13(3):R20. doi: 10.1186/gb-2012-13-3-r20.

5.
6.

Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation.

Wu L, Mao L, Qi Y.

Plant Physiol. 2012 Oct;160(2):990-9. doi: 10.1104/pp.112.200279. Epub 2012 Jul 30.

7.

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis.

Blevins T, Podicheti R, Mishra V, Marasco M, Wang J, Rusch D, Tang H, Pikaard CS.

Elife. 2015 Oct 2;4:e09591. doi: 10.7554/eLife.09591.

8.

NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.

He XJ, Hsu YF, Pontes O, Zhu J, Lu J, Bressan RA, Pikaard C, Wang CS, Zhu JK.

Genes Dev. 2009 Feb 1;23(3):318-30. doi: 10.1101/gad.1765209.

9.

RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.

Lee TF, Gurazada SG, Zhai J, Li S, Simon SA, Matzke MA, Chen X, Meyers BC.

Epigenetics. 2012 Jul;7(7):781-95. doi: 10.4161/epi.20290. Epub 2012 Jul 1.

10.

Dicer-independent RNA-directed DNA methylation in Arabidopsis.

Yang DL, Zhang G, Tang K, Li J, Yang L, Huang H, Zhang H, Zhu JK.

Cell Res. 2016 Jan;26(1):66-82. doi: 10.1038/cr.2015.145. Epub 2015 Dec 8.

11.

Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

Gasciolli V, Mallory AC, Bartel DP, Vaucheret H.

Curr Biol. 2005 Aug 23;15(16):1494-500.

12.

A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis.

Ye R, Chen Z, Lian B, Rowley MJ, Xia N, Chai J, Li Y, He XJ, Wierzbicki AT, Qi Y.

Mol Cell. 2016 Jan 21;61(2):222-35. doi: 10.1016/j.molcel.2015.11.015. Epub 2015 Dec 17.

13.

Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis.

Brosnan CA, Mitter N, Christie M, Smith NA, Waterhouse PM, Carroll BJ.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14741-6. Epub 2007 Sep 4.

15.

DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.

Xie Z, Allen E, Wilken A, Carrington JC.

Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12984-9. Epub 2005 Aug 29.

16.

Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions.

Wang H, Zhang X, Liu J, Kiba T, Woo J, Ojo T, Hafner M, Tuschl T, Chua NH, Wang XJ.

Plant J. 2011 Jul;67(2):292-304. doi: 10.1111/j.1365-313X.2011.04594.x. Epub 2011 May 10.

17.

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

Vazquez F, Vaucheret H, Rajagopalan R, Lepers C, Gasciolli V, Mallory AC, Hilbert JL, Bartel DP, Crété P.

Mol Cell. 2004 Oct 8;16(1):69-79.

18.

In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.

Haag JR, Ream TS, Marasco M, Nicora CD, Norbeck AD, Pasa-Tolic L, Pikaard CS.

Mol Cell. 2012 Dec 14;48(5):811-8. doi: 10.1016/j.molcel.2012.09.027. Epub 2012 Nov 8.

19.

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis.

Li S, Vandivier LE, Tu B, Gao L, Won SY, Li S, Zheng B, Gregory BD, Chen X.

Genome Res. 2015 Feb;25(2):235-45. doi: 10.1101/gr.182238.114. Epub 2014 Nov 20.

20.

siRNAs from miRNA sites mediate DNA methylation of target genes.

Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H.

Nucleic Acids Res. 2010 Nov;38(20):6883-94. doi: 10.1093/nar/gkq590. Epub 2010 Jul 9.

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