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Items: 1 to 20 of 215

1.

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.

Nature. 2007 Mar 29;446(7135):537-41. Epub 2007 Mar 7.

PMID:
17344860
2.

Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.

Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF.

Environ Microbiol. 2009 Feb;11(2):313-25. doi: 10.1111/j.1462-2920.2008.01769.x. Epub 2008 Sep 23.

PMID:
18826438
3.

Community structure and metabolism through reconstruction of microbial genomes from the environment.

Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF.

Nature. 2004 Mar 4;428(6978):37-43. Epub 2004 Feb 1.

PMID:
14961025
4.

Community proteomics of a natural microbial biofilm.

Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC 2nd, Shah M, Hettich RL, Banfield JF.

Science. 2005 Jun 24;308(5730):1915-20. Epub 2005 May 5.

5.

Top-down identification of protein biomarkers in bacteria with unsequenced genomes.

Wynne C, Fenselau C, Demirev PA, Edwards N.

Anal Chem. 2009 Dec 1;81(23):9633-42. doi: 10.1021/ac9016677.

PMID:
19883058
6.

Community genomics in microbial ecology and evolution.

Allen EE, Banfield JF.

Nat Rev Microbiol. 2005 Jun;3(6):489-98. Review.

PMID:
15931167
7.

"Unknown genome" proteomics: a new NADP-dependent epimerase/dehydratase revealed by N-terminal sequencing, inverted PCR, and high resolution mass spectrometry.

Simeonova DD, Susnea I, Moise A, Schink B, Przybylski M.

Mol Cell Proteomics. 2009 Jan;8(1):122-31. doi: 10.1074/mcp.M800242-MCP200. Epub 2008 Aug 20.

8.

Application of proteomics to Pseudomonas aeruginosa.

Nouwens AS, Walsh BJ, Cordwell SJ.

Adv Biochem Eng Biotechnol. 2003;83:117-40. Review.

PMID:
12934928
9.

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.

Bhaya D, Grossman AR, Steunou AS, Khuri N, Cohan FM, Hamamura N, Melendrez MC, Bateson MM, Ward DM, Heidelberg JF.

ISME J. 2007 Dec;1(8):703-13. Epub 2007 Oct 25.

PMID:
18059494
10.

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal.

Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL, VerBerkmoes NC, Banfield JF.

ISME J. 2008 Aug;2(8):853-64. doi: 10.1038/ismej.2008.38. Epub 2008 May 1.

PMID:
18449217
11.

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF.

Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2383-90. doi: 10.1073/pnas.0907041107. Epub 2010 Feb 2.

12.

Proteogenomic approaches for the molecular characterization of natural microbial communities.

Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP.

OMICS. 2005 Winter;9(4):301-33.

PMID:
16402891
13.

Proteomics of marine bacteria.

Schweder T, Markert S, Hecker M.

Electrophoresis. 2008 Jun;29(12):2603-16. doi: 10.1002/elps.200800009. Review.

PMID:
18494036
14.

Comparative metagenomics of microbial communities.

Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM.

Science. 2005 Apr 22;308(5721):554-7.

15.

Virus population dynamics and acquired virus resistance in natural microbial communities.

Andersson AF, Banfield JF.

Science. 2008 May 23;320(5879):1047-50. doi: 10.1126/science.1157358.

16.

Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.

Denef VJ, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF.

J Proteome Res. 2007 Aug;6(8):3152-61. Epub 2007 Jun 28.

PMID:
17602579
17.

Design and testing of 'genome-proxy' microarrays to profile marine microbial communities.

Rich VI, Konstantinidis K, DeLong EF.

Environ Microbiol. 2008 Feb;10(2):506-21. Epub 2007 Nov 19.

PMID:
18028413
18.

Cultivating the uncultivated: a community genomics perspective.

Tyson GW, Banfield JF.

Trends Microbiol. 2005 Sep;13(9):411-5. Review.

PMID:
16043355
19.

DNA microarrays--techniques and applications in microbial systems.

Majt√°n T, Bukovsk√° G, Timko J.

Folia Microbiol (Praha). 2004;49(6):635-64. Review.

PMID:
15881400
20.

Identification and characterization of metagenomic fragments from tidal flat sediment.

Kim BK, Park YD, Oh HM, Chun J.

J Microbiol. 2009 Aug;47(4):402-10. doi: 10.1007/s12275-009-0099-5. Epub 2009 Sep 9.

PMID:
19763413

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