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Items: 1 to 20 of 112


New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.

Piekna-Przybylska D, Decatur WA, Fournier MJ.

RNA. 2007 Mar;13(3):305-12. Epub 2007 Feb 5.


The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae.

Torchet C, Badis G, Devaux F, Costanzo G, Werner M, Jacquier A.

RNA. 2005 Jun;11(6):928-38.


Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome.

Schattner P, Decatur WA, Davis CA, Ares M Jr, Fournier MJ, Lowe TM.

Nucleic Acids Res. 2004 Aug 11;32(14):4281-96. Print 2004.


Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs.

Decatur WA, Schnare MN.

Mol Cell Biol. 2008 May;28(10):3089-100. doi: 10.1128/MCB.01574-07. Epub 2008 Mar 10.


A computational screen for methylation guide snoRNAs in yeast.

Lowe TM, Eddy SR.

Science. 1999 Feb 19;283(5405):1168-71.


Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast.

Qu LH, Henras A, Lu YJ, Zhou H, Zhou WX, Zhu YQ, Zhao J, Henry Y, Caizergues-Ferrer M, Bachellerie JP.

Mol Cell Biol. 1999 Feb;19(2):1144-58.


Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing.

van Nues RW, Granneman S, Kudla G, Sloan KE, Chicken M, Tollervey D, Watkins NJ.

EMBO J. 2011 May 10;30(12):2420-30. doi: 10.1038/emboj.2011.148.


Identification of genes that function in the biogenesis and localization of small nucleolar RNAs in Saccharomyces cerevisiae.

Qiu H, Eifert J, Wacheul L, Thiry M, Berger AC, Jakovljevic J, Woolford JL Jr, Corbett AH, Lafontaine DL, Terns RM, Terns MP.

Mol Cell Biol. 2008 Jun;28(11):3686-99. doi: 10.1128/MCB.01115-07. Epub 2008 Mar 31.


Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.

Gaspin C, Cavaillé J, Erauso G, Bachellerie JP.

J Mol Biol. 2000 Apr 7;297(4):895-906. Erratum in: J Mol Biol 2000 Jul 21;300(4):1017-8.


Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping.

Esguerra J, Warringer J, Blomberg A.

RNA. 2008 Apr;14(4):649-56. doi: 10.1261/rna.845808. Epub 2008 Feb 6.


Yeast Rrp8p, a novel methyltransferase responsible for m1A 645 base modification of 25S rRNA.

Peifer C, Sharma S, Watzinger P, Lamberth S, Kötter P, Entian KD.

Nucleic Acids Res. 2013 Jan;41(2):1151-63. doi: 10.1093/nar/gks1102. Epub 2012 Nov 23.


A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae.

Samarsky DA, Fournier MJ.

Nucleic Acids Res. 1999 Jan 1;27(1):161-4.


Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p.

Henras A, Dez C, Noaillac-Depeyre J, Henry Y, Caizergues-Ferrer M.

Nucleic Acids Res. 2001 Jul 1;29(13):2733-46.


High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast.

Burlacu E, Lackmann F, Aguilar LC, Belikov S, Nues RV, Trahan C, Hector RD, Dominelli-Whiteley N, Cockroft SL, Wieslander L, Oeffinger M, Granneman S.

Nat Commun. 2017 Sep 28;8(1):714. doi: 10.1038/s41467-017-00761-8.


rRNA modifications and ribosome function.

Decatur WA, Fournier MJ.

Trends Biochem Sci. 2002 Jul;27(7):344-51.


In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation.

Aw JG, Shen Y, Wilm A, Sun M, Lim XN, Boon KL, Tapsin S, Chan YS, Tan CP, Sim AY, Zhang T, Susanto TT, Fu Z, Nagarajan N, Wan Y.

Mol Cell. 2016 May 19;62(4):603-17. doi: 10.1016/j.molcel.2016.04.028. Epub 2016 May 12.


Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome.

Decatur WA, Liang XH, Piekna-Przybylska D, Fournier MJ.

Methods Enzymol. 2007;425:283-316. Review.


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