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Items: 1 to 20 of 77

1.

Disease-specific genomic analysis: identifying the signature of pathologic biology.

Nicolau M, Tibshirani R, Børresen-Dale AL, Jeffrey SS.

Bioinformatics. 2007 Apr 15;23(8):957-65. Epub 2007 Feb 3.

PMID:
17277331
2.

Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation.

Smith DD, Saetrom P, Snøve O Jr, Lundberg C, Rivas GE, Glackin C, Larson GP.

BMC Bioinformatics. 2008 Jan 28;9:63. doi: 10.1186/1471-2105-9-63.

3.

Markers improve clustering of CGH data.

Liu J, Ranka S, Kahveci T.

Bioinformatics. 2007 Feb 15;23(4):450-7. Epub 2006 Dec 6.

PMID:
17150994
4.

Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks.

Gevaert O, De Smet F, Timmerman D, Moreau Y, De Moor B.

Bioinformatics. 2006 Jul 15;22(14):e184-90.

PMID:
16873470
5.

Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer.

Buness A, Kuner R, Ruschhaupt M, Poustka A, Sültmann H, Tresch A.

Bioinformatics. 2007 Sep 1;23(17):2273-80. Epub 2007 Jun 28.

PMID:
17599933
6.

Avoiding model selection bias in small-sample genomic datasets.

Berrar D, Bradbury I, Dubitzky W.

Bioinformatics. 2006 May 15;22(10):1245-50. Epub 2006 Feb 24. Erratum in: Bioinformatics. 2006 Oct 1;22(19):2453.

PMID:
16500931
7.

Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: a study to determine feasibility and reproducibility in the context of clinical care.

Tebbit CL, Zhai J, Untch BR, Ellis MJ, Dressman HK, Bentley RC, Baker JA, Marcom PK, Nevins JR, Marks JR, Olson JA Jr.

Breast Cancer Res Treat. 2009 Dec;118(3):635-43. doi: 10.1007/s10549-008-0301-1. Epub 2009 Feb 18.

8.

Challenges in projecting clustering results across gene expression-profiling datasets.

Lusa L, McShane LM, Reid JF, De Cecco L, Ambrogi F, Biganzoli E, Gariboldi M, Pierotti MA.

J Natl Cancer Inst. 2007 Nov 21;99(22):1715-23. Epub 2007 Nov 13.

PMID:
18000217
9.

A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.

Statnikov A, Aliferis CF, Tsamardinos I, Hardin D, Levy S.

Bioinformatics. 2005 Mar 1;21(5):631-43. Epub 2004 Sep 16.

PMID:
15374862
10.
11.

Large scale data mining approach for gene-specific standardization of microarray gene expression data.

Yoon S, Yang Y, Choi J, Seong J.

Bioinformatics. 2006 Dec 1;22(23):2898-904. Epub 2006 Oct 10.

PMID:
17032674
12.

Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome.

Barry WT, Kernagis DN, Dressman HK, Griffis RJ, Hunter JD, Olson JA, Marks JR, Ginsburg GS, Marcom PK, Nevins JR, Geradts J, Datto MB.

J Clin Oncol. 2010 May 1;28(13):2198-206. doi: 10.1200/JCO.2009.26.7245. Epub 2010 Apr 5.

13.

Converting a breast cancer microarray signature into a high-throughput diagnostic test.

Glas AM, Floore A, Delahaye LJ, Witteveen AT, Pover RC, Bakx N, Lahti-Domenici JS, Bruinsma TJ, Warmoes MO, Bernards R, Wessels LF, Van't Veer LJ.

BMC Genomics. 2006 Oct 30;7:278.

14.

Independent component analysis-based penalized discriminant method for tumor classification using gene expression data.

Huang DS, Zheng CH.

Bioinformatics. 2006 Aug 1;22(15):1855-62. Epub 2006 May 18.

PMID:
16709589
15.

Accurate detection of aneuploidies in array CGH and gene expression microarray data.

Myers CL, Dunham MJ, Kung SY, Troyanskaya OG.

Bioinformatics. 2004 Dec 12;20(18):3533-43. Epub 2004 Jul 29.

PMID:
15284100
16.
17.

Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method.

Takahashi H, Kobayashi T, Honda H.

Bioinformatics. 2005 Jan 15;21(2):179-86. Epub 2004 Aug 12.

PMID:
15308545
18.

A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data.

Yosef N, Yakhini Z, Tsalenko A, Kristensen V, Børresen-Dale AL, Ruppin E, Sharan R.

Bioinformatics. 2007 Jan 15;23(2):e91-8.

PMID:
17237111
19.

Robust Selection of Predictive Genes via a Simple Classifier.

Vinciotti V, Tucker A, Kellam P, Liu X.

Appl Bioinformatics. 2006;5(1):1-11.

PMID:
16539532
20.

Improving molecular cancer class discovery through sparse non-negative matrix factorization.

Gao Y, Church G.

Bioinformatics. 2005 Nov 1;21(21):3970-5.

PMID:
16244221

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