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Items: 1 to 20 of 103

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Glucose metabolism at high density growth of E. coli B and E. coli K: differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses.

Phue JN, Noronha SB, Hattacharyya R, Wolfe AJ, Shiloach J.

Biotechnol Bioeng. 2005 Jun 30;90(7):805-20. Erratum in: Biotechnol Bioeng. 2005 Sep 5;91(5):649.

PMID:
15806547
3.
5.

Investigation of the TCA cycle and the glyoxylate shunt in Escherichia coli BL21 and JM109 using (13)C-NMR/MS.

Noronha SB, Yeh HJ, Spande TF, Shiloach J.

Biotechnol Bioeng. 2000 May 5;68(3):316-27.

PMID:
10745200
6.

Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using (13)C metabolic flux analysis.

Usui Y, Hirasawa T, Furusawa C, Shirai T, Yamamoto N, Mori H, Shimizu H.

Microb Cell Fact. 2012 Jun 21;11:87. doi: 10.1186/1475-2859-11-87.

7.

The role of Cra in regulating acetate excretion and osmotic tolerance in E. coli K-12 and E. coli B at high density growth.

Son YJ, Phue JN, Trinh LB, Lee SJ, Shiloach J.

Microb Cell Fact. 2011 Jun 30;10:52. doi: 10.1186/1475-2859-10-52.

9.

A reverse glyoxylate shunt to build a non-native route from C4 to C2 in Escherichia coli.

Mainguet SE, Gronenberg LS, Wong SS, Liao JC.

Metab Eng. 2013 Sep;19:116-27. doi: 10.1016/j.ymben.2013.06.004. Epub 2013 Aug 16.

PMID:
23938029
10.

[2D [1H,13C] NMR study of carbon fluxes during glucose utilization by Escherichia coli MG1655].

Kivero AD, Bocharov EV, Doroshenko VG, Sobol' AG, Dubinnyń≠ MA, Arsen'ev AS.

Prikl Biokhim Mikrobiol. 2008 Mar-Apr;44(2):168-75. Russian.

PMID:
18669258
11.

Central carbon metabolism of Saccharomyces cerevisiae explored by biosynthetic fractional (13)C labeling of common amino acids.

Maaheimo H, Fiaux J, Cakar ZP, Bailey JE, Sauer U, Szyperski T.

Eur J Biochem. 2001 Apr;268(8):2464-79.

12.

Global transcription and metabolic flux analysis of Escherichia coli in glucose-limited fed-batch cultivations.

Lemuth K, Hardiman T, Winter S, Pfeiffer D, Keller MA, Lange S, Reuss M, Schmid RD, Siemann-Herzberg M.

Appl Environ Microbiol. 2008 Nov;74(22):7002-15. doi: 10.1128/AEM.01327-08. Epub 2008 Sep 19.

13.

Catabolite regulation analysis of Escherichia coli for acetate overflow mechanism and co-consumption of multiple sugars based on systems biology approach using computer simulation.

Matsuoka Y, Shimizu K.

J Biotechnol. 2013 Oct 20;168(2):155-73. doi: 10.1016/j.jbiotec.2013.06.023. Epub 2013 Jul 10.

PMID:
23850830
14.

The functional structure of central carbon metabolism in Pseudomonas putida KT2440.

Sudarsan S, Dethlefsen S, Blank LM, Siemann-Herzberg M, Schmid A.

Appl Environ Microbiol. 2014 Sep;80(17):5292-303. doi: 10.1128/AEM.01643-14. Epub 2014 Jun 20.

15.

Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification.

Kadir TA, Mannan AA, Kierzek AM, McFadden J, Shimizu K.

Microb Cell Fact. 2010 Nov 19;9:88. doi: 10.1186/1475-2859-9-88.

17.

Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants.

Yao R, Hirose Y, Sarkar D, Nakahigashi K, Ye Q, Shimizu K.

Microb Cell Fact. 2011 Aug 11;10:67. doi: 10.1186/1475-2859-10-67.

18.

Use of a Bacterial Luciferase Monitoring System To Estimate Real-Time Dynamics of Intracellular Metabolism in Escherichia coli.

Shimada T, Tanaka K.

Appl Environ Microbiol. 2016 Sep 16;82(19):5960-8. doi: 10.1128/AEM.01400-16. Print 2016 Oct 1.

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