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Items: 1 to 20 of 124

1.

Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.

Tembe W, Zavaljevski N, Bode E, Chase C, Geyer J, Wasieloski L, Benson G, Reifman J.

Bioinformatics. 2007 Jan 1;23(1):5-13. Epub 2006 Oct 26.

PMID:
17068088
2.

A high-throughput pipeline for designing microarray-based pathogen diagnostic assays.

Vijaya Satya R, Zavaljevski N, Kumar K, Reifman J.

BMC Bioinformatics. 2008 Apr 10;9:185. doi: 10.1186/1471-2105-9-185.

3.

In silico evaluation of a novel DNA chip based fingerprinting technology for viral identification.

Méndez-Tenorio A, Flores-Cortés P, Guerra-Trejo A, Jaimes-Díaz H, Reyes-Rosales E, Maldonado-Rodríguez A, Espinosa-Lara M, Maldonado-Rodríguez R, Kenneth LB.

Rev Latinoam Microbiol. 2006 Apr-Jun;48(2):56-65.

PMID:
17578073
4.

In silico microarray probe design for diagnosis of multiple pathogens.

Vijaya Satya R, Zavaljevski N, Kumar K, Bode E, Padilla S, Wasieloski L, Geyer J, Reifman J.

BMC Genomics. 2008 Oct 21;9:496. doi: 10.1186/1471-2164-9-496.

5.

Discrimination between biothreat agents and 'near neighbor' species using a resequencing array.

Taitt CR, Malanoski AP, Lin B, Stenger DA, Ligler FS, Kusterbeck AW, Anderson GP, Harmon SE, Shriver-Lake LC, Pollack SK, Lennon DM, Lobo-Menendez F, Wang Z, Schnur JM.

FEMS Immunol Med Microbiol. 2008 Dec;54(3):356-64. doi: 10.1111/j.1574-695X.2008.00486.x.

6.

hybseek: pathogen primer design tool for diagnostic multi-analyte assays.

Frech C, Breuer K, Ronacher B, Kern T, Sohn C, Gebauer G.

Comput Methods Programs Biomed. 2009 May;94(2):152-60. doi: 10.1016/j.cmpb.2008.12.007. Epub 2009 Feb 6.

PMID:
19201047
7.

Oligonucleotide microarray identification of Bacillus anthracis strains using support vector machines.

Doran M, Raicu DS, Furst JD, Settimi R, Schipma M, Chandler DP.

Bioinformatics. 2007 Feb 15;23(4):487-92. Epub 2007 Jan 3.

PMID:
17204462
8.

Comparison of whole genome amplification methods for detecting pathogenic bacterial genomic DNA using microarray.

Uda A, Tanabayashi K, Fujita O, Hotta A, Yamamoto Y, Yamada A.

Jpn J Infect Dis. 2007 Nov;60(6):355-61.

9.

A fast and flexible approach to oligonucleotide probe design for genomes and gene families.

Feng S, Tillier ER.

Bioinformatics. 2007 May 15;23(10):1195-202. Epub 2007 Mar 28.

PMID:
17392329
10.

Francisella tularensis genomics and proteomics.

Titball RW, Petrosino JF.

Ann N Y Acad Sci. 2007 Jun;1105:98-121. Epub 2007 Apr 13. Review.

PMID:
17435122
11.

[DNA microarray for the detection of Yersinia pesits].

Huang H, Ma WL, Dong XQ, Zhang B, Wu Q, Zheng WL.

Di Yi Jun Yi Da Xue Xue Bao. 2004 Jan;24(1):47-9. Chinese.

12.

Simultaneous real-time PCR detection of Bacillus anthracis, Francisella tularensis and Yersinia pestis.

Skottman T, Piiparinen H, Hyytiäinen H, Myllys V, Skurnik M, Nikkari S.

Eur J Clin Microbiol Infect Dis. 2007 Mar;26(3):207-11.

PMID:
17294160
13.

From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis.

Sundaresh S, Randall A, Unal B, Petersen JM, Belisle JT, Hartley MG, Duffield M, Titball RW, Davies DH, Felgner PL, Baldi P.

Bioinformatics. 2007 Jul 1;23(13):i508-18.

PMID:
17646338
14.

MPDA: microarray pooled DNA analyzer.

Yang HC, Huang MC, Li LH, Lin CH, Yu AL, Diccianni MB, Wu JY, Chen YT, Fann CS.

BMC Bioinformatics. 2008 Apr 15;9:196. doi: 10.1186/1471-2105-9-196.

15.

Automated image analysis for array hybridization experiments.

Steinfath M, Wruck W, Seidel H, Lehrach H, Radelof U, O'Brien J.

Bioinformatics. 2001 Jul;17(7):634-41.

PMID:
11448881
16.

Comparing bacterial DNA microarray fingerprints.

Willse A, Chandler DP, White A, Protic M, Daly DS, Wunschel S.

Stat Appl Genet Mol Biol. 2005;4:Article19. Epub 2005 Aug 15.

PMID:
16646836
17.

ProbeMaker: an extensible framework for design of sets of oligonucleotide probes.

Stenberg J, Nilsson M, Landegren U.

BMC Bioinformatics. 2005 Sep 19;6:229.

18.

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.

Hu G, Llinás M, Li J, Preiser PR, Bozdech Z.

BMC Bioinformatics. 2007 Sep 19;8:350.

19.

Bacterial artificial chromosome fingerprint arrays for the differentiation of transcriptomic differences in mycobacteria.

Li AH, Lam WL, Stokes RW.

J Microbiol Methods. 2008 Dec;75(3):416-24. doi: 10.1016/j.mimet.2008.07.008. Epub 2008 Jul 20.

PMID:
18706942
20.

Development of a 9600-clone procedure for oligonucleotide fingerprinting of rRNA genes: utilization to identify soil bacterial rRNA genes that correlate in abundance with the development of avocado root rot.

Bent E, Yin B, Figueroa A, Ye J, Fu Q, Liu Z, McDonald V, Jeske D, Jiang T, Borneman J.

J Microbiol Methods. 2006 Oct;67(1):171-80. Epub 2006 May 18.

PMID:
16712989

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