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Items: 1 to 20 of 349

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1.

Implementation and performance evaluation of reconstruction algorithms on graphics processors.

Castaño Díez D, Mueller H, Frangakis AS.

J Struct Biol. 2007 Jan;157(1):288-95. Epub 2006 Sep 1.

PMID:
17029985
2.

Performance evaluation of image processing algorithms on the GPU.

Castaño-Díez D, Moser D, Schoenegger A, Pruggnaller S, Frangakis AS.

J Struct Biol. 2008 Oct;164(1):153-60. doi: 10.1016/j.jsb.2008.07.006. Epub 2008 Jul 24.

PMID:
18692140
3.

A matrix approach to tomographic reconstruction and its implementation on GPUs.

Vázquez F, Garzón EM, Fernández JJ.

J Struct Biol. 2010 Apr;170(1):146-51. doi: 10.1016/j.jsb.2010.01.021. Epub 2010 Feb 2.

PMID:
20132889
4.

XMIPP: a new generation of an open-source image processing package for electron microscopy.

Sorzano CO, Marabini R, Velázquez-Muriel J, Bilbao-Castro JR, Scheres SH, Carazo JM, Pascual-Montano A.

J Struct Biol. 2004 Nov;148(2):194-204.

PMID:
15477099
5.

On developing B-spline registration algorithms for multi-core processors.

Shackleford JA, Kandasamy N, Sharp GC.

Phys Med Biol. 2010 Nov 7;55(21):6329-51. doi: 10.1088/0031-9155/55/21/001. Epub 2010 Oct 12.

PMID:
20938071
6.

On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs.

Xu F, Xu W, Jones M, Keszthelyi B, Sedat J, Agard D, Mueller K.

Comput Methods Programs Biomed. 2010 Jun;98(3):261-70. doi: 10.1016/j.cmpb.2009.09.003. Epub 2009 Oct 21.

7.

The parallelization of SPIDER on distributed-memory computers using MPI.

Yang C, Penczek PA, Leith A, Asturias FJ, Ng EG, Glaeser RM, Frank J.

J Struct Biol. 2007 Jan;157(1):240-9. Epub 2006 Jun 8.

PMID:
16859923
8.

High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.

Samant SS, Xia J, Muyan-Ozcelik P, Owens JD.

Med Phys. 2008 Aug;35(8):3546-53.

PMID:
18777915
9.

The CUBLAS and CULA based GPU acceleration of adaptive finite element framework for bioluminescence tomography.

Zhang B, Yang X, Yang F, Yang X, Qin C, Han D, Ma X, Liu K, Tian J.

Opt Express. 2010 Sep 13;18(19):20201-14. doi: 10.1364/OE.18.020201.

PMID:
20940911
10.

Equalizer: a scalable parallel rendering framework.

Eilemann S, Makhinya M, Pajarola R.

IEEE Trans Vis Comput Graph. 2009 May-Jun;15(3):436-52. doi: 10.1109/TVCG.2008.104.

11.
12.

Accelerating molecular modeling applications with graphics processors.

Stone JE, Phillips JC, Freddolino PL, Hardy DJ, Trabuco LG, Schulten K.

J Comput Chem. 2007 Dec;28(16):2618-40.

PMID:
17894371
13.

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software.

Schmid N, Bötschi M, van Gunsteren WF.

J Comput Chem. 2010 Jun;31(8):1636-43. doi: 10.1002/jcc.21447.

PMID:
20127715
14.

GPU computing for systems biology.

Dematté L, Prandi D.

Brief Bioinform. 2010 May;11(3):323-33. doi: 10.1093/bib/bbq006. Epub 2010 Mar 7. Review.

PMID:
20211843
15.

Accelerating frequency-domain diffuse optical tomographic image reconstruction using graphics processing units.

Prakash J, Chandrasekharan V, Upendra V, Yalavarthy PK.

J Biomed Opt. 2010 Nov-Dec;15(6):066009. doi: 10.1117/1.3506216.

PMID:
21198183
16.

GPU-accelerated 3D Bayesian image reconstruction from Compton scattered data.

Nguyen VG, Lee SJ, Lee MN.

Phys Med Biol. 2011 May 7;56(9):2817-36. doi: 10.1088/0031-9155/56/9/012. Epub 2011 Apr 8.

PMID:
21478572
17.

Highly accelerated feature detection in proteomics data sets using modern graphics processing units.

Hussong R, Gregorius B, Tholey A, Hildebrandt A.

Bioinformatics. 2009 Aug 1;25(15):1937-43. doi: 10.1093/bioinformatics/btp294. Epub 2009 May 14.

PMID:
19447788
18.

HeinzelCluster: accelerated reconstruction for FORE and OSEM3D.

Vollmar S, Michel C, Treffert JT, Newport DF, Casey M, Knöss C, Wienhard K, Liu X, Defrise M, Heiss WD.

Phys Med Biol. 2002 Aug 7;47(15):2651-8.

PMID:
12200930
19.

Acceleration of 3D, nonlinear warping using standard video graphics hardware: implementation and initial validation.

Levin D, Dey D, Slomka PJ.

Comput Med Imaging Graph. 2004 Dec;28(8):471-83.

PMID:
15541954
20.

GPU-based streaming architectures for fast cone-beam CT image reconstruction and demons deformable registration.

Sharp GC, Kandasamy N, Singh H, Folkert M.

Phys Med Biol. 2007 Oct 7;52(19):5771-83. Epub 2007 Sep 10.

PMID:
17881799

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