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Items: 1 to 20 of 139

1.

siVirus: web-based antiviral siRNA design software for highly divergent viral sequences.

Naito Y, Ui-Tei K, Nishikawa T, Takebe Y, Saigo K.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W448-50.

2.

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.

Naito Y, Yamada T, Matsumiya T, Ui-Tei K, Saigo K, Morishita S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W589-91.

3.

HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome.

Westerhout EM, Ooms M, Vink M, Das AT, Berkhout B.

Nucleic Acids Res. 2005 Feb 1;33(2):796-804. Print 2005.

4.

A novel program to design siRNAs simultaneously effective to highly variable virus genomes.

Lee HS, Ahn J, Jun EJ, Yang S, Joo CH, Kim YK, Lee H.

Biochem Biophys Res Commun. 2009 Jul 10;384(4):431-5. doi: 10.1016/j.bbrc.2009.04.143. Epub 2009 May 5.

PMID:
19422797
5.

A protocol for designing siRNAs with high functionality and specificity.

Birmingham A, Anderson E, Sullivan K, Reynolds A, Boese Q, Leake D, Karpilow J, Khvorova A.

Nat Protoc. 2007;2(9):2068-78.

PMID:
17853862
6.

TROD: T7 RNAi Oligo Designer.

Dudek P, Picard D.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W121-3.

8.

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.

Naito Y, Yamada T, Ui-Tei K, Morishita S, Saigo K.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W124-9.

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11.

Optimal design and validation of antiviral siRNA for targeting hepatitis B virus.

Fu J, Tang ZM, Gao X, Zhao F, Zhong H, Wen MR, Sun X, Song HF, Qian XH.

Acta Pharmacol Sin. 2008 Dec;29(12):1522-8. doi: 10.1111/j.1745-7254.2008.00891.x.

12.

Positional effects and strand preference of RNA interference against hepatitis C virus target sequences.

Smith RM, Smolic R, Volarevic M, Wu GY.

J Viral Hepat. 2007 Mar;14(3):194-212.

PMID:
17305886
13.

Predicting siRNA efficiency.

Li W, Cha L.

Cell Mol Life Sci. 2007 Jul;64(14):1785-92. Review.

PMID:
17415516
14.

Effective siRNA targeting of the 3' untranslated region of the West Nile virus genome.

Anthony KG, Bai F, Krishnan MN, Fikrig E, Koski RA.

Antiviral Res. 2009 Jun;82(3):166-8. doi: 10.1016/j.antiviral.2008.12.007. Epub 2009 Jan 7.

PMID:
19135091
15.

Suppression of bovine viral diarrhea virus replication by small interfering RNA and short hairpin RNA-mediated RNA interference.

Lambeth LS, Moore RJ, Muralitharan MS, Doran TJ.

Vet Microbiol. 2007 Jan 31;119(2-4):132-43. Epub 2006 Sep 22.

PMID:
17052865
16.

Broad-spectrum antiviral activity of small interfering RNA targeting the conserved RNA termini of Lassa virus.

Müller S, Günther S.

Antimicrob Agents Chemother. 2007 Jun;51(6):2215-8. Epub 2007 Mar 19.

17.

RFRCDB-siRNA: improved design of siRNAs by random forest regression model coupled with database searching.

Jiang P, Wu H, Da Y, Sang F, Wei J, Sun X, Lu Z.

Comput Methods Programs Biomed. 2007 Sep;87(3):230-8. Epub 2007 Jul 17.

PMID:
17644215
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19.

The efficacy of siRNAs against hepatitis C virus is strongly influenced by structure and target site accessibility.

Sagan SM, Nasheri N, Luebbert C, Pezacki JP.

Chem Biol. 2010 May 28;17(5):515-27. doi: 10.1016/j.chembiol.2010.04.011.

20.

RNA interference: its use as antiviral therapy.

Haasnoot J, Berkhout B.

Handb Exp Pharmacol. 2006;(173):117-50. Review.

PMID:
16594614

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