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Items: 1 to 20 of 1058

1.

Improving the specificity of high-throughput ortholog prediction.

Fulton DL, Li YY, Laird MR, Horsman BG, Roche FM, Brinkman FS.

BMC Bioinformatics. 2006 May 28;7:270.

2.

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

Remm M, Storm CE, Sonnhammer EL.

J Mol Biol. 2001 Dec 14;314(5):1041-52.

PMID:
11743721
4.

Choosing BLAST options for better detection of orthologs as reciprocal best hits.

Moreno-Hagelsieb G, Latimer K.

Bioinformatics. 2008 Feb 1;24(3):319-24.

5.

OrthoFocus: program for identification of orthologs in multiple genomes in family-focused studies.

Ivliev AE, Sergeeva MG.

J Bioinform Comput Biol. 2008 Aug;6(4):811-24.

PMID:
18763744
6.

OrthologID: automation of genome-scale ortholog identification within a parsimony framework.

Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R.

Bioinformatics. 2006 Mar 15;22(6):699-707.

7.

Clustering of main orthologs for multiple genomes.

Fu Z, Jiang T.

J Bioinform Comput Biol. 2008 Jun;6(3):573-84.

PMID:
18574863
8.

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S.

BMC Bioinformatics. 2008 Jun 13;9:278. doi: 10.1186/1471-2105-9-278.

9.

Comparative annotation of viral genomes with non-conserved gene structure.

de Groot S, Mailund T, Hein J.

Bioinformatics. 2007 May 1;23(9):1080-9.

10.

OMA Browser--exploring orthologous relations across 352 complete genomes.

Schneider A, Dessimoz C, Gonnet GH.

Bioinformatics. 2007 Aug 15;23(16):2180-2.

11.

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.

Whiteside MD, Winsor GL, Laird MR, Brinkman FS.

Nucleic Acids Res. 2013 Jan;41(Database issue):D366-76. doi: 10.1093/nar/gks1241.

12.

Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.

Conte MG, Gaillard S, Droc G, Perin C.

BMC Genomics. 2008 Apr 21;9:183. doi: 10.1186/1471-2164-9-183.

13.
14.

THOR: targeted high-throughput ortholog reconstructor.

Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ.

Bioinformatics. 2007 Oct 1;23(19):2622-4.

15.

Discovery of regulatory elements in vertebrates through comparative genomics.

Prakash A, Tompa M.

Nat Biotechnol. 2005 Oct;23(10):1249-56.

PMID:
16211068
16.

PhyloPat: phylogenetic pattern analysis of eukaryotic genes.

Hulsen T, de Vlieg J, Groenen PM.

BMC Bioinformatics. 2006 Sep 1;7:398.

17.

Multi-species comparative mapping in silico using the COMPASS strategy.

Liu L, Gong G, Liu Y, Natarajan S, Larkin DM, Everts-van der Wind A, Rebeiz M, Beever JE.

Bioinformatics. 2004 Jan 22;20(2):148-54.

18.

Multiple-sequence functional annotation and the generalized hidden Markov phylogeny.

McAuliffe JD, Pachter L, Jordan MI.

Bioinformatics. 2004 Aug 12;20(12):1850-60.

19.

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

Parra G, Bradnam K, Korf I.

Bioinformatics. 2007 May 1;23(9):1061-7.

20.

Homology search for genes.

Cui X, Vinar T, Brejová B, Shasha D, Li M.

Bioinformatics. 2007 Jul 1;23(13):i97-103.

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