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Items: 1 to 20 of 561

1.

Sequence comparison and protein structure prediction.

Dunbrack RL Jr.

Curr Opin Struct Biol. 2006 Jun;16(3):374-84. Epub 2006 May 19. Review.

PMID:
16713709
3.
4.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

5.
6.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.

PMID:
17488755
7.

The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins.

Venclovas C, Margelevicius M.

Proteins. 2009;77 Suppl 9:81-8. doi: 10.1002/prot.22515.

PMID:
19639635
8.
9.

Enhanced protein fold recognition using a structural alphabet.

Deschavanne P, Tufféry P.

Proteins. 2009 Jul;76(1):129-37. doi: 10.1002/prot.22324.

PMID:
19089985
10.

PFRES: protein fold classification by using evolutionary information and predicted secondary structure.

Chen K, Kurgan L.

Bioinformatics. 2007 Nov 1;23(21):2843-50. Epub 2007 Oct 17.

PMID:
17942446
11.

Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.

Kundrotas PJ, Lensink MF, Alexov E.

Int J Biol Macromol. 2008 Aug 15;43(2):198-208. doi: 10.1016/j.ijbiomac.2008.05.004. Epub 2008 May 21.

PMID:
18572239
12.
13.

A guide to template based structure prediction.

Qu X, Swanson R, Day R, Tsai J.

Curr Protein Pept Sci. 2009 Jun;10(3):270-85. Review.

PMID:
19519455
14.

Hidden Markov models that use predicted secondary structures for fold recognition.

Hargbo J, Elofsson A.

Proteins. 1999 Jul 1;36(1):68-76.

PMID:
10373007
15.

DPANN: improved sequence to structure alignments following fold recognition.

Reinhardt A, Eisenberg D.

Proteins. 2004 Aug 15;56(3):528-38.

PMID:
15229885
16.
17.

COACH: profile-profile alignment of protein families using hidden Markov models.

Edgar RC, Sjölander K.

Bioinformatics. 2004 May 22;20(8):1309-18. Epub 2004 Feb 12.

PMID:
14962937
18.
19.

Computational tools for protein modeling.

Xu D, Xu Y, Uberbacher EC.

Curr Protein Pept Sci. 2000 Jul;1(1):1-21. Review.

PMID:
12369918
20.

A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.

Moult J.

Curr Opin Struct Biol. 2005 Jun;15(3):285-9. Review.

PMID:
15939584

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