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Items: 1 to 20 of 126

1.

CED: a conformational epitope database.

Huang J, Honda W.

BMC Immunol. 2006 Apr 7;7:7.

2.

CEP: a conformational epitope prediction server.

Kulkarni-Kale U, Bhosle S, Kolaskar AS.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W168-71.

3.

IEDB-3D: structural data within the immune epitope database.

Ponomarenko J, Papangelopoulos N, Zajonc DM, Peters B, Sette A, Bourne PE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1164-70. doi: 10.1093/nar/gkq888. Epub 2010 Oct 28.

4.

The immune epitope database (IEDB) 3.0.

Vita R, Overton JA, Greenbaum JA, Ponomarenko J, Clark JD, Cantrell JR, Wheeler DK, Gabbard JL, Hix D, Sette A, Peters B.

Nucleic Acids Res. 2015 Jan;43(Database issue):D405-12. doi: 10.1093/nar/gku938. Epub 2014 Oct 9.

5.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

6.

Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature.

Zhang W, Xiong Y, Zhao M, Zou H, Ye X, Liu J.

BMC Bioinformatics. 2011 Aug 17;12:341. doi: 10.1186/1471-2105-12-341.

7.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

8.

MIMOX: a web tool for phage display based epitope mapping.

Huang J, Gutteridge A, Honda W, Kanehisa M.

BMC Bioinformatics. 2006 Oct 12;7:451.

9.

SEPPA: a computational server for spatial epitope prediction of protein antigens.

Sun J, Wu D, Xu T, Wang X, Xu X, Tao L, Li YX, Cao ZW.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W612-6. doi: 10.1093/nar/gkp417. Epub 2009 May 22.

10.

Bcipep: a database of B-cell epitopes.

Saha S, Bhasin M, Raghava GP.

BMC Genomics. 2005 May 29;6:79.

11.

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.

Jespersen MC, Peters B, Nielsen M, Marcatili P.

Nucleic Acids Res. 2017 Jul 3;45(W1):W24-W29. doi: 10.1093/nar/gkx346.

12.

GlycoCD: a repository for carbohydrate-related CD antigens.

Kumar S, Lütteke T, Schwartz-Albiez R.

Bioinformatics. 2012 Oct 1;28(19):2553-5. Epub 2012 Jul 30.

PMID:
22847935
13.

Design and utilization of epitope-based databases and predictive tools.

Salimi N, Fleri W, Peters B, Sette A.

Immunogenetics. 2010 Apr;62(4):185-96. doi: 10.1007/s00251-010-0435-2. Epub 2010 Mar 6. Review.

14.

ElliPro: a new structure-based tool for the prediction of antibody epitopes.

Ponomarenko J, Bui HH, Li W, Fusseder N, Bourne PE, Sette A, Peters B.

BMC Bioinformatics. 2008 Dec 2;9:514. doi: 10.1186/1471-2105-9-514.

16.

TMDB: a literature-curated database for small molecular compounds found from tea.

Yue Y, Chu GX, Liu XS, Tang X, Wang W, Liu GJ, Yang T, Ling TJ, Wang XG, Zhang ZZ, Xia T, Wan XC, Bao GH.

BMC Plant Biol. 2014 Sep 16;14:243. doi: 10.1186/s12870-014-0243-1.

17.

SDAP: database and computational tools for allergenic proteins.

Ivanciuc O, Schein CH, Braun W.

Nucleic Acids Res. 2003 Jan 1;31(1):359-62.

18.

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

Popenda M, Szachniuk M, Blazewicz M, Wasik S, Burke EK, Blazewicz J, Adamiak RW.

BMC Bioinformatics. 2010 May 6;11:231. doi: 10.1186/1471-2105-11-231.

19.

The immune epitope database 2.0.

Vita R, Zarebski L, Greenbaum JA, Emami H, Hoof I, Salimi N, Damle R, Sette A, Peters B.

Nucleic Acids Res. 2010 Jan;38(Database issue):D854-62. doi: 10.1093/nar/gkp1004. Epub 2009 Nov 11.

20.

CIG-DB: the database for human or mouse immunoglobulin and T cell receptor genes available for cancer studies.

Nakamura Y, Komiyama T, Furue M, Gojobori T, Akiyama Y.

BMC Bioinformatics. 2010 Jul 27;11:398. doi: 10.1186/1471-2105-11-398.

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