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Items: 1 to 20 of 143

1.

Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.

Marsden RL, Lee D, Maibaum M, Yeats C, Orengo CA.

Nucleic Acids Res. 2006 Feb 15;34(3):1066-80. Print 2006.

2.

Identification and distribution of protein families in 120 completed genomes using Gene3D.

Lee D, Grant A, Marsden RL, Orengo C.

Proteins. 2005 May 15;59(3):603-15.

PMID:
15768405
3.
4.

PSI-2: structural genomics to cover protein domain family space.

Dessailly BH, Nair R, Jaroszewski L, Fajardo JE, Kouranov A, Lee D, Fiser A, Godzik A, Rost B, Orengo C.

Structure. 2009 Jun 10;17(6):869-81. doi: 10.1016/j.str.2009.03.015. Review.

5.

Exploiting protein structure data to explore the evolution of protein function and biological complexity.

Marsden RL, Ranea JA, Sillero A, Redfern O, Yeats C, Maibaum M, Lee D, Addou S, Reeves GA, Dallman TJ, Orengo CA.

Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):425-40. Review.

6.

Domain combinations in archaeal, eubacterial and eukaryotic proteomes.

Apic G, Gough J, Teichmann SA.

J Mol Biol. 2001 Jul 6;310(2):311-25.

PMID:
11428892
7.
8.
9.

Gene3D: merging structure and function for a Thousand genomes.

Lees J, Yeats C, Redfern O, Clegg A, Orengo C.

Nucleic Acids Res. 2010 Jan;38(Database issue):D296-300. doi: 10.1093/nar/gkp987. Epub 2009 Nov 11.

10.

Automatic target selection for structural genomics on eukaryotes.

Liu J, Hegyi H, Acton TB, Montelione GT, Rost B.

Proteins. 2004 Aug 1;56(2):188-200.

PMID:
15211504
11.

Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. Epub 2007 Nov 21.

13.
14.

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.

Lees JG, Lee D, Studer RA, Dawson NL, Sillitoe I, Das S, Yeats C, Dessailly BH, Rentzsch R, Orengo CA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D240-5. doi: 10.1093/nar/gkt1205. Epub 2013 Nov 21.

15.

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.

Lees J, Yeats C, Perkins J, Sillitoe I, Rentzsch R, Dessailly BH, Orengo C.

Nucleic Acids Res. 2012 Jan;40(Database issue):D465-71. doi: 10.1093/nar/gkr1181. Epub 2011 Dec 1. Erratum in: Nucleic Acids Res. 2012 May;40(10):4725.

16.

Protein families and their evolution-a structural perspective.

Orengo CA, Thornton JM.

Annu Rev Biochem. 2005;74:867-900. Review.

PMID:
15954844
18.

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.

Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51.

19.

A structural perspective on genome evolution.

Lee D, Grant A, Buchan D, Orengo C.

Curr Opin Struct Biol. 2003 Jun;13(3):359-69. Review.

PMID:
12831888
20.

Metalloproteomics: high-throughput structural and functional annotation of proteins in structural genomics.

Shi W, Zhan C, Ignatov A, Manjasetty BA, Marinkovic N, Sullivan M, Huang R, Chance MR.

Structure. 2005 Oct;13(10):1473-86.

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