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Items: 1 to 20 of 146

1.

A comparison of phasing algorithms for trios and unrelated individuals.

Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P; International HapMap Consortium.

Am J Hum Genet. 2006 Mar;78(3):437-50. Epub 2006 Jan 26.

2.

2SNP: scalable phasing method for trios and unrelated individuals.

Brinza D, Zelikovsky A.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):313-8. doi: 10.1109/TCBB.2007.1068.

PMID:
18451440
3.

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals.

Browning BL, Browning SR.

Am J Hum Genet. 2009 Feb;84(2):210-23. doi: 10.1016/j.ajhg.2009.01.005. Epub 2009 Feb 5.

4.

Using DNA pools for genotyping trios.

Beckman KB, Abel KJ, Braun A, Halperin E.

Nucleic Acids Res. 2006;34(19):e129. Epub 2006 Oct 4.

5.

A haplotype-linkage analysis method for estimating recombination rates using dense SNP trio data.

Zhao LP, Li SS, Shen F.

Genet Epidemiol. 2007 Feb;31(2):154-72.

PMID:
17219374
6.

Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms.

Li SS, Khalid N, Carlson C, Zhao LP.

Biostatistics. 2003 Oct;4(4):513-22.

8.

Highly scalable genotype phasing by entropy minimization.

Gusev A, Măndoiu II, Paşaniuc B.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):252-61. doi: 10.1109/TCBB.2007.70223.

PMID:
18451434
9.

Haplotype inference for population data with genotyping errors.

Zhu W, Kuk AY, Guo J.

Biom J. 2009 Aug;51(4):644-58. doi: 10.1002/bimj.200800215.

PMID:
19688759
10.

Algorithms for inferring haplotypes.

Niu T.

Genet Epidemiol. 2004 Dec;27(4):334-47. Review.

PMID:
15368348
11.

A haplotype inference algorithm for trios based on deterministic sampling.

Iliadis A, Watkinson J, Anastassiou D, Wang X.

BMC Genet. 2010 Aug 23;11:78. doi: 10.1186/1471-2156-11-78.

12.

Family-based association tests for genomewide association scans.

Chen WM, Abecasis GR.

Am J Hum Genet. 2007 Nov;81(5):913-26. Epub 2007 Sep 18.

13.

Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference.

Wang L, Wang Z, Yang W.

BMC Bioinformatics. 2009 Jul 15;10:216. doi: 10.1186/1471-2105-10-216.

14.

Maximum-likelihood estimation of haplotype frequencies in nuclear families.

Becker T, Knapp M.

Genet Epidemiol. 2004 Jul;27(1):21-32.

PMID:
15185400
15.

A comparison of tagging methods and their tagging space.

Ke X, Miretti MM, Broxholme J, Hunt S, Beck S, Bentley DR, Deloukas P, Cardon LR.

Hum Mol Genet. 2005 Sep 15;14(18):2757-67. Epub 2005 Aug 15.

16.

Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation.

Stephens M, Scheet P.

Am J Hum Genet. 2005 Mar;76(3):449-62. Epub 2005 Jan 31.

17.

Comparative analysis of haplotype association mapping algorithms.

McClurg P, Pletcher MT, Wiltshire T, Su AI.

BMC Bioinformatics. 2006 Feb 9;7:61.

18.
19.

Evaluation of two methods for computational HLA haplotypes inference using a real dataset.

Bettencourt BF, Santos MR, Fialho RN, Couto AR, Peixoto MJ, Pinheiro JP, Spínola H, Mora MG, Santos C, Brehm A, Bruges-Armas J.

BMC Bioinformatics. 2008 Jan 29;9:68. doi: 10.1186/1471-2105-9-68.

20.

Informative SNP selection methods based on SNP prediction.

He J, Zelikovsky A.

IEEE Trans Nanobioscience. 2007 Mar;6(1):60-7.

PMID:
17393851
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