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Items: 1 to 20 of 108

1.

Coarse-grained strategy for modeling protein stability in concentrated solutions. II: phase behavior.

Shen VK, Cheung JK, Errington JR, Truskett TM.

Biophys J. 2006 Mar 15;90(6):1949-60. Epub 2005 Dec 30.

2.

Coarse-grained strategy for modeling protein stability in concentrated solutions.

Cheung JK, Truskett TM.

Biophys J. 2005 Oct;89(4):2372-84. Epub 2005 Jul 22.

3.

Coarse-grained strategy for modeling protein stability in concentrated solutions. III: directional protein interactions.

Cheung JK, Shen VK, Errington JR, Truskett TM.

Biophys J. 2007 Jun 15;92(12):4316-24. Epub 2007 Mar 30.

4.

Analytical model for studying how environmental factors influence protein conformational stability in solution.

Cheung JK, Raverkar PS, Truskett TM.

J Chem Phys. 2006 Dec 14;125(22):224903.

PMID:
17176163
5.

Multiple extrema in the intermolecular potential and the phase diagram of protein solutions.

Brandon S, Katsonis P, Vekilov PG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jun;73(6 Pt 1):061917. Epub 2006 Jun 26.

PMID:
16906874
6.
7.

Molecular origin of constant m-values, denatured state collapse, and residue-dependent transition midpoints in globular proteins.

O'Brien EP, Brooks BR, Thirumalai D.

Biochemistry. 2009 May 5;48(17):3743-54. doi: 10.1021/bi8021119.

PMID:
19278261
8.

Simulating protein unfolding under pressure with a coarse-grained model.

Perezzan R, Rey A.

J Chem Phys. 2012 Nov 14;137(18):185102. doi: 10.1063/1.4765057.

PMID:
23163394
9.

Characterization of the low-temperature properties of a simplified protein model.

Hagmann JG, Nakagawa N, Peyrard M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jan;89(1):012705. Epub 2014 Jan 8.

PMID:
24580255
10.

Hydrophobic collapse and cold denaturation in the Jagla model of water.

Buldyrev SV, Kumar P, Sastry S, Stanley HE, Weiner S.

J Phys Condens Matter. 2010 Jul 21;22(28):284109. doi: 10.1088/0953-8984/22/28/284109. Epub 2010 Jun 21.

PMID:
21399281
11.

Dynamic control of protein conformation transition in chromatographic separation based on hydrophobic interactions: molecular dynamics simulation.

Zhang L, Lu D, Liu Z.

J Chromatogr A. 2009 Mar 20;1216(12):2483-90. doi: 10.1016/j.chroma.2009.01.038. Epub 2009 Jan 17.

PMID:
19178912
12.

Insights into crowding effects on protein stability from a coarse-grained model.

Shen VK, Cheung JK, Errington JR, Truskett TM.

J Biomech Eng. 2009 Jul;131(7):071002. doi: 10.1115/1.3127259.

PMID:
19640127
13.

Phase behavior of a lattice hydrophobic oligomer in explicit water.

Romero-Vargas Castrillón S, Matysiak S, Stillinger FH, Rossky PJ, Debenedetti PG.

J Phys Chem B. 2012 Aug 9;116(31):9540-8. doi: 10.1021/jp3039237. Epub 2012 Jul 23.

PMID:
22823886
14.

Finite size effects on thermal denaturation of globular proteins.

Li MS, Klimov DK, Thirumalai D.

Phys Rev Lett. 2004 Dec 31;93(26 Pt 1):268107. Epub 2004 Dec 21.

PMID:
15698029
15.
16.

Thermodynamics and kinetics of a Gō proteinlike heteropolymer model with two-state folding characteristics.

Kallias A, Bachmann M, Janke W.

J Chem Phys. 2008 Feb 7;128(5):055102. doi: 10.1063/1.2822287.

PMID:
18266462
17.

Evidence, from simulations, of a single state with residual native structure at the thermal denaturation midpoint of a small globular protein.

Maisuradze GG, Liwo A, Ołdziej S, Scheraga HA.

J Am Chem Soc. 2010 Jul 14;132(27):9444-52. doi: 10.1021/ja1031503.

19.

Heteropolymer collapse theory for protein folding in the pressure-temperature plane.

Cheung JK, Shah P, Truskett TM.

Biophys J. 2006 Oct 1;91(7):2427-35. Epub 2006 Jul 14.

20.

Folding of gas-phase polyalanines in a static electric field: alignment, deformations, and polarization effects.

Calvo F, Dugourd P.

Biophys J. 2008 Jul;95(1):18-32. doi: 10.1529/biophysj.107.124685. Epub 2008 Jan 25.

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