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Items: 1 to 20 of 161

1.

Genome sequencing and analysis of Aspergillus oryzae.

Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H.

Nature. 2005 Dec 22;438(7071):1157-61.

PMID:
16372010
2.

Genomics of industrial Aspergilli and comparison with toxigenic relatives.

Machida M, Terabayashi Y, Sano M, Yamane N, Tamano K, Payne GA, Yu J, Cleveland TE, Nierman WC.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2008 Sep;25(9):1147-51. doi: 10.1080/02652030802273114.

PMID:
18798040
3.

Genomics of Aspergillus oryzae.

Kobayashi T, Abe K, Asai K, Gomi K, Juvvadi PR, Kato M, Kitamoto K, Takeuchi M, Machida M.

Biosci Biotechnol Biochem. 2007 Mar;71(3):646-70. Epub 2007 Mar 7. Review.

4.

Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species.

Umemura M, Koike H, Yamane N, Koyama Y, Satou Y, Kikuzato I, Teruya M, Tsukahara M, Imada Y, Wachi Y, Miwa Y, Yano S, Tamano K, Kawarabayasi Y, Fujimori KE, Machida M, Hirano T.

DNA Res. 2012 Oct;19(5):375-82. doi: 10.1093/dnares/dss019. Epub 2012 Aug 21.

5.

What does genetic diversity of Aspergillus flavus tell us about Aspergillus oryzae?

Chang PK, Ehrlich KC.

Int J Food Microbiol. 2010 Apr 15;138(3):189-99. doi: 10.1016/j.ijfoodmicro.2010.01.033. Epub 2010 Feb 1. Review.

PMID:
20163884
6.
7.

Impact of Aspergillus oryzae genomics on industrial production of metabolites.

Abe K, Gomi K, Hasegawa F, Machida M.

Mycopathologia. 2006 Sep;162(3):143-53. Review.

PMID:
16944282
8.

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

Nature. 2005 Dec 22;438(7071):1105-15.

PMID:
16372000
9.

Comparative genomic analysis of Aspergillus oryzae strains 3.042 and RIB40 for soy sauce fermentation.

Zhao G, Yao Y, Wang C, Hou L, Cao X.

Int J Food Microbiol. 2013 Jun 17;164(2-3):148-54. doi: 10.1016/j.ijfoodmicro.2013.03.027. Epub 2013 Apr 9.

PMID:
23673060
10.

Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae.

Vongsangnak W, Olsen P, Hansen K, Krogsgaard S, Nielsen J.

BMC Genomics. 2008 May 23;9:245. doi: 10.1186/1471-2164-9-245.

11.

Genomics of Aspergillus oryzae: learning from the history of Koji mold and exploration of its future.

Machida M, Yamada O, Gomi K.

DNA Res. 2008 Aug;15(4):173-83. doi: 10.1093/dnares/dsn020. Review.

12.

Homologs of aflatoxin biosynthesis genes and sequence of aflR in Aspergillus oryzae and Aspergillus sojae.

Watson AJ, Fuller LJ, Jeenes DJ, Archer DB.

Appl Environ Microbiol. 1999 Jan;65(1):307-10.

13.

Comparison of the genomes and transcriptomes associated with the different protease secretions of Aspergillus oryzae 100-8 and 3.042.

Zhao G, Yao Y, Hou L, Wang C, Cao X.

Biotechnol Lett. 2014 Oct;36(10):2053-8. doi: 10.1007/s10529-014-1574-6. Epub 2014 Jul 22.

PMID:
25048221
14.

Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation.

Tamano K, Sano M, Yamane N, Terabayashi Y, Toda T, Sunagawa M, Koike H, Hatamoto O, Umitsuki G, Takahashi T, Koyama Y, Asai R, Abe K, Machida M.

Fungal Genet Biol. 2008 Feb;45(2):139-51. Epub 2007 Sep 25.

PMID:
17967552
15.

Aspergillus flavus genomics as a tool for studying the mechanism of aflatoxin formation.

Yu J, Payne GA, Nierman WC, Machida M, Bennett JW, Campbell BC, Robens JF, Bhatnagar D, Dean RA, Cleveland TE.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2008 Sep;25(9):1152-7.

PMID:
19238624
16.

Cladal relatedness among Aspergillus oryzae isolates and Aspergillus flavus S and L morphotype isolates.

Chang PK, Ehrlich KC, Hua SS.

Int J Food Microbiol. 2006 Apr 25;108(2):172-7. Epub 2006 Jan 23.

PMID:
16430983
17.

Genome-scale analysis of the high-efficient protein secretion system of Aspergillus oryzae.

Liu L, Feizi A, Österlund T, Hjort C, Nielsen J.

BMC Syst Biol. 2014 Jun 24;8:73. doi: 10.1186/1752-0509-8-73.

18.

The phylogenetics of mycotoxin and sclerotium production in Aspergillus flavus and Aspergillus oryzae.

Geiser DM, Dorner JW, Horn BW, Taylor JW.

Fungal Genet Biol. 2000 Dec;31(3):169-79.

PMID:
11273679
19.

Discovery of a novel superfamily of type III polyketide synthases in Aspergillus oryzae.

Seshime Y, Juvvadi PR, Fujii I, Kitamoto K.

Biochem Biophys Res Commun. 2005 May 27;331(1):253-60.

PMID:
15845386
20.

The proportion of non-aflatoxigenic strains of the Aspergillus flavus/oryzae complex from meju by analyses of the aflatoxin biosynthetic genes.

Hong SB, Lee M, Kim DH, Chung SH, Shin HD, Samson RA.

J Microbiol. 2013 Dec;51(6):766-72. doi: 10.1007/s12275-013-3128-3. Epub 2013 Dec 19.

PMID:
24385353
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