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Items: 1 to 20 of 91

1.

Systematic discovery of new recognition peptides mediating protein interaction networks.

Neduva V, Linding R, Su-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB.

PLoS Biol. 2005 Dec;3(12):e405. Epub 2005 Nov 15.

2.

Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures.

Stein A, Aloy P.

PLoS Comput Biol. 2010 May 20;6(5):e1000789. doi: 10.1371/journal.pcbi.1000789.

3.

A correlated motif approach for finding short linear motifs from protein interaction networks.

Tan SH, Hugo W, Sung WK, Ng SK.

BMC Bioinformatics. 2006 Nov 16;7:502.

4.

Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.

Hou T, Chen K, McLaughlin WA, Lu B, Wang W.

PLoS Comput Biol. 2006 Jan;2(1):e1. Epub 2006 Jan 27.

5.

Disordered binding regions and linear motifs--bridging the gap between two models of molecular recognition.

Mészáros B, Dosztányi Z, Simon I.

PLoS One. 2012;7(10):e46829. doi: 10.1371/journal.pone.0046829. Epub 2012 Oct 3.

6.

Peptides mediating interaction networks: new leads at last.

Neduva V, Russell RB.

Curr Opin Biotechnol. 2006 Oct;17(5):465-71. Epub 2006 Sep 7. Review.

PMID:
16962311
7.

Prediction of short linear protein binding regions.

Mooney C, Pollastri G, Shields DC, Haslam NJ.

J Mol Biol. 2012 Jan 6;415(1):193-204. doi: 10.1016/j.jmb.2011.10.025. Epub 2011 Oct 21.

PMID:
22079048
8.

Equivalent binding sites reveal convergently evolved interaction motifs.

Henschel A, Kim WK, Schroeder M.

Bioinformatics. 2006 Mar 1;22(5):550-5. Epub 2005 Nov 15.

PMID:
16287935
9.

Structural insight into modest binding of a non-PXXP ligand to the signal transducing adaptor molecule-2 Src homology 3 domain.

Kaneko T, Kumasaka T, Ganbe T, Sato T, Miyazawa K, Kitamura N, Tanaka N.

J Biol Chem. 2003 Nov 28;278(48):48162-8. Epub 2003 Sep 16. Erratum in: J Biol Chem. 2004 Feb 6;279(6):5047.

10.

Novel Src homology 3 domain-binding motifs identified from proteomic screen of a Pro-rich region.

Jia CY, Nie J, Wu C, Li C, Li SS.

Mol Cell Proteomics. 2005 Aug;4(8):1155-66. Epub 2005 May 31.

11.

Promiscuous binding nature of SH3 domains to their target proteins.

Agrawal V, Kishan KV.

Protein Pept Lett. 2002 Jun;9(3):185-93. Review.

PMID:
12144515
12.

Predicting protein-peptide interactions via a network-based motif sampler.

Reiss DJ, Schwikowski B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82.

PMID:
15262809
13.

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.

Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G.

Science. 2002 Jan 11;295(5553):321-4. Epub 2001 Dec 13.

14.

Computational prediction of protein-protein interactions.

Obenauer JC, Yaffe MB.

Methods Mol Biol. 2004;261:445-68. Review.

PMID:
15064475
15.

Recognition of non-canonical peptides by the yeast Fus1p SH3 domain: elucidation of a common mechanism for diverse SH3 domain specificities.

Kim J, Lee CD, Rath A, Davidson AR.

J Mol Biol. 2008 Mar 28;377(3):889-901. doi: 10.1016/j.jmb.2008.01.063. Epub 2008 Jan 31.

PMID:
18280496
16.

Accurate prediction of peptide binding sites on protein surfaces.

Petsalaki E, Stark A, García-Urdiales E, Russell RB.

PLoS Comput Biol. 2009 Mar;5(3):e1000335. doi: 10.1371/journal.pcbi.1000335. Epub 2009 Mar 27.

17.
18.

Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides.

Wiedemann U, Boisguerin P, Leben R, Leitner D, Krause G, Moelling K, Volkmer-Engert R, Oschkinat H.

J Mol Biol. 2004 Oct 22;343(3):703-18.

PMID:
15465056
19.

Structural, functional, and bioinformatic studies demonstrate the crucial role of an extended peptide binding site for the SH3 domain of yeast Abp1p.

Stollar EJ, Garcia B, Chong PA, Rath A, Lin H, Forman-Kay JD, Davidson AR.

J Biol Chem. 2009 Sep 25;284(39):26918-27. doi: 10.1074/jbc.M109.028431. Epub 2009 Jul 9.

20.

Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain.

Hou T, Zhang W, Case DA, Wang W.

J Mol Biol. 2008 Feb 29;376(4):1201-14. doi: 10.1016/j.jmb.2007.12.054. Epub 2008 Jan 3.

PMID:
18206907

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