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Items: 1 to 20 of 100

1.

Environments shape the nucleotide composition of genomes.

Foerstner KU, von Mering C, Hooper SD, Bork P.

EMBO Rep. 2005 Dec;6(12):1208-13.

2.

On the organizational dynamics of the genetic code.

Zhang Z, Yu J.

Genomics Proteomics Bioinformatics. 2011 Apr;9(1-2):21-9. doi: 10.1016/S1672-0229(11)60004-1.

3.

Prokaryotic nucleotide composition is shaped by both phylogeny and the environment.

Reichenberger ER, Rosen G, Hershberg U, Hershberg R.

Genome Biol Evol. 2015 Apr 9;7(5):1380-9. doi: 10.1093/gbe/evv063.

4.
5.

Relative amino acid composition signatures of organisms and environments.

Moura A, Savageau MA, Alves R.

PLoS One. 2013 Oct 25;8(10):e77319. doi: 10.1371/journal.pone.0077319. eCollection 2013.

6.
7.
8.

GC content-independent amino acid patterns in bacteria and archaea.

Schmidt A, Rzanny M, Schmidt A, Hagen M, Sch├╝tze E, Kothe E.

J Basic Microbiol. 2012 Apr;52(2):195-205. doi: 10.1002/jobm.201100067. Epub 2011 Jul 21.

PMID:
21780150
9.

Community-wide analysis of microbial genome sequence signatures.

Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF.

Genome Biol. 2009;10(8):R85. doi: 10.1186/gb-2009-10-8-r85. Epub 2009 Aug 21.

10.

Community structure and metabolism through reconstruction of microbial genomes from the environment.

Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF.

Nature. 2004 Mar 4;428(6978):37-43. Epub 2004 Feb 1.

PMID:
14961025
11.
12.

Compositional dynamics of guanine and cytosine content in prokaryotic genomes.

Hu J, Zhao X, Zhang Z, Yu J.

Res Microbiol. 2007 May;158(4):363-70. Epub 2007 Mar 6.

PMID:
17449227
13.

Low-pass sequencing for microbial comparative genomics.

Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L.

BMC Genomics. 2004 Jan 12;5(1):3.

14.
15.

Oxygen and guanine-cytosine profiles in marine environments.

Romero H, Pereira E, Naya H, Musto H.

J Mol Evol. 2009 Aug;69(2):203-6. doi: 10.1007/s00239-009-9230-9. Epub 2009 Jun 25.

16.

Role of mutational bias and natural selection on genome-wide nucleotide bias in prokaryotic organisms.

Banerjee T, Gupta SK, Ghosh TC.

Biosystems. 2005 Jul;81(1):11-8.

PMID:
15917123
17.

Genome DNA Sequence Variation, Evolution, and Function in Bacteria and Archaea.

Nishida H.

Curr Issues Mol Biol. 2013;15:19-24. Epub 2012 Jul 6.

18.
19.

Insights into bacterial genome composition through variable target GC content profiling.

Mann S, Li J, Chen YP.

J Comput Biol. 2010 Jan;17(1):79-96. doi: 10.1089/cmb.2009.0058.

PMID:
20078399
20.

The GC content of LSU rRNA evolves across topological and functional regions of the ribosome in all three domains of life.

Mallatt J, Chittenden KD.

Mol Phylogenet Evol. 2014 Mar;72:17-30. doi: 10.1016/j.ympev.2013.12.007. Epub 2014 Jan 4.

PMID:
24394731

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