Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 93

1.

Whole-genome shotgun optical mapping of Rhodospirillum rubrum.

Reslewic S, Zhou S, Place M, Zhang Y, Briska A, Goldstein S, Churas C, Runnheim R, Forrest D, Lim A, Lapidus A, Han CS, Roberts GP, Schwartz DC.

Appl Environ Microbiol. 2005 Sep;71(9):5511-22.

2.

Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.

Zhou S, Kvikstad E, Kile A, Severin J, Forrest D, Runnheim R, Churas C, Hickman JW, Mackenzie C, Choudhary M, Donohue T, Kaplan S, Schwartz DC.

Genome Res. 2003 Sep;13(9):2142-51.

3.

Shotgun optical maps of the whole Escherichia coli O157:H7 genome.

Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, Qi R, Skiadas J, Ramanathan A, Perna NT, Plunkett G 3rd, Burland V, Mau B, Hackett J, Blattner FR, Anantharaman TS, Mishra B, Schwartz DC.

Genome Res. 2001 Sep;11(9):1584-93.

4.

Optical mapping as a routine tool for bacterial genome sequence finishing.

Latreille P, Norton S, Goldman BS, Henkhaus J, Miller N, Barbazuk B, Bode HB, Darby C, Du Z, Forst S, Gaudriault S, Goodner B, Goodrich-Blair H, Slater S.

BMC Genomics. 2007 Sep 14;8:321.

5.

Whole-genome shotgun optical mapping of Deinococcus radiodurans.

Lin J, Qi R, Aston C, Jing J, Anantharaman TS, Mishra B, White O, Daly MJ, Minton KW, Venter JC, Schwartz DC.

Science. 1999 Sep 3;285(5433):1558-62.

6.

A whole-genome shotgun optical map of Yersinia pestis strain KIM.

Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin J, Forrest D, Runnheim R, Churas C, Lamers C, Perna NT, Burland V, Blattner FR, Mishra B, Schwartz DC.

Appl Environ Microbiol. 2002 Dec;68(12):6321-31.

7.

A shotgun optical map of the entire Plasmodium falciparum genome.

Lai Z, Jing J, Aston C, Clarke V, Apodaca J, Dimalanta ET, Carucci DJ, Gardner MJ, Mishra B, Anantharaman TS, Paxia S, Hoffman SL, Craig Venter J, Huff EJ, Schwartz DC.

Nat Genet. 1999 Nov;23(3):309-13.

PMID:
10610179
8.

Shotgun optical mapping of the entire Leishmania major Friedlin genome.

Zhou S, Kile A, Kvikstad E, Bechner M, Severin J, Forrest D, Runnheim R, Churas C, Anantharaman TS, Myler P, Vogt C, Ivens A, Stuart K, Schwartz DC.

Mol Biochem Parasitol. 2004 Nov;138(1):97-106.

PMID:
15500921
9.

Optical mapping of Plasmodium falciparum chromosome 2.

Jing J, Lai Z, Aston C, Lin J, Carucci DJ, Gardner MJ, Mishra B, Anantharaman TS, Tettelin H, Cummings LM, Hoffman SL, Venter JC, Schwartz DC.

Genome Res. 1999 Feb;9(2):175-81.

10.

Construction of bacterial artificial chromosome libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.

Foster JM, Kumar S, Ganatra MB, Kamal IH, Ware J, Ingram J, Pope-Chappell J, Guiliano D, Whitton C, Daub J, Blaxter ML, Slatko BE.

Int J Parasitol. 2004 May;34(6):733-46.

PMID:
15111095
11.

Optical PCR: genomic analysis by long-range PCR and optical mapping.

Skiadas J, Aston C, Samad A, Anantharaman TS, Mishra B, Schwartz DC.

Mamm Genome. 1999 Oct;10(10):1005-9.

PMID:
10501971
12.

Fosmid-based physical mapping of the Histoplasma capsulatum genome.

Magrini V, Warren WC, Wallis J, Goldman WE, Xu J, Mardis ER, McPherson JD.

Genome Res. 2004 Aug;14(8):1603-9.

13.

Genetic and physiological characterization of the Rhodospirillum rubrum carbon monoxide dehydrogenase system.

Kerby RL, Hong SS, Ensign SA, Coppoc LJ, Ludden PW, Roberts GP.

J Bacteriol. 1992 Aug;174(16):5284-94.

14.

Genomics via optical mapping. III: Contiging genomic DNA.

Anantharaman T, Mishra B, Schwartz D.

Proc Int Conf Intell Syst Mol Biol. 1999:18-27.

PMID:
10786282
15.

The puh structural gene coding for the H subunit of the Rhodospirillum rubrum photoreaction center.

BĂ©rard J, Gingras G.

Biochem Cell Biol. 1991 Feb-Mar;69(2-3):122-31.

PMID:
1903263
16.

Whole genome mapping as a fast-track tool to assess genomic stability of sequenced Staphylococcus aureus strains.

Sabirova JS, Xavier BB, Ieven M, Goossens H, Malhotra-Kumar S.

BMC Res Notes. 2014 Oct 8;7:704. doi: 10.1186/1756-0500-7-704.

18.

Mapping contigs using CONTIGuator.

Galardini M, Mengoni A, Bazzicalupo M.

Methods Mol Biol. 2015;1231:163-76. doi: 10.1007/978-1-4939-1720-4_11.

PMID:
25343865
19.

The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.

Wang Z, Hobson N, Galindo L, Zhu S, Shi D, McDill J, Yang L, Hawkins S, Neutelings G, Datla R, Lambert G, Galbraith DW, Grassa CJ, Geraldes A, Cronk QC, Cullis C, Dash PK, Kumar PA, Cloutier S, Sharpe AG, Wong GK, Wang J, Deyholos MK.

Plant J. 2012 Nov;72(3):461-73. doi: 10.1111/j.1365-313X.2012.05093.x. Epub 2012 Aug 14.

20.

Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules.

Jing J, Reed J, Huang J, Hu X, Clarke V, Edington J, Housman D, Anantharaman TS, Huff EJ, Mishra B, Porter B, Shenker A, Wolfson E, Hiort C, Kantor R, Aston C, Schwartz DC.

Proc Natl Acad Sci U S A. 1998 Jul 7;95(14):8046-51.

Supplemental Content

Support Center