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Items: 1 to 20 of 266

1.

The map-based sequence of the rice genome.

International Rice Genome Sequencing Project..

Nature. 2005 Aug 11;436(7052):793-800.

PMID:
16100779
2.

The genome sequence and structure of rice chromosome 1.

Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, Antonio BA, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, Chiden Y, Hayashi M, Okamoto M, Ando T, Aoki H, Arita K, Hamada M, Harada C, Hijishita S, Honda M, Ichikawa Y, Idonuma A, Iijima M, Ikeda M, Ikeno M, Ito S, Ito T, Ito Y, Ito Y, Iwabuchi A, Kamiya K, Karasawa W, Katagiri S, Kikuta A, Kobayashi N, Kono I, Machita K, Maehara T, Mizuno H, Mizubayashi T, Mukai Y, Nagasaki H, Nakashima M, Nakama Y, Nakamichi Y, Nakamura M, Namiki N, Negishi M, Ohta I, Ono N, Saji S, Sakai K, Shibata M, Shimokawa T, Shomura A, Song J, Takazaki Y, Terasawa K, Tsuji K, Waki K, Yamagata H, Yamane H, Yoshiki S, Yoshihara R, Yukawa K, Zhong H, Iwama H, Endo T, Ito H, Hahn JH, Kim HI, Eun MY, Yano M, Jiang J, Gojobori T.

Nature. 2002 Nov 21;420(6913):312-6.

PMID:
12447438
3.

Sequence and analysis of rice chromosome 4.

Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B.

Nature. 2002 Nov 21;420(6913):316-20.

PMID:
12447439
4.

From mapping to sequencing, post-sequencing and beyond.

Sasaki T, Matsumoto T, Antonio BA, Nagamura Y.

Plant Cell Physiol. 2005 Jan;46(1):3-13. Epub 2005 Jan 19. Review.

PMID:
15659433
5.

In-depth view of structure, activity, and evolution of rice chromosome 10.

Rice Chromosome 10 Sequencing Consortium..

Science. 2003 Jun 6;300(5625):1566-9. Erratum in: Science. 2003 Sep 5;301(5638):1327.

6.

A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H.

Science. 2002 Apr 5;296(5565):79-92.

7.

Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat.

La Rota M, Sorrells ME.

Funct Integr Genomics. 2004 Mar;4(1):34-46. Epub 2004 Jan 22.

PMID:
14740255
8.

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.

Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA.

Genome Res. 2000 Jul;10(7):982-90.

9.

Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.

Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J.

J Genet Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8.

PMID:
18407058
10.

Sequence-based alignment of sorghum chromosome 3 and rice chromosome 1 reveals extensive conservation of gene order and one major chromosomal rearrangement.

Klein PE, Klein RR, Vrebalov J, Mullet JE.

Plant J. 2003 Jun;34(5):605-21. Erratum in: Plant J. 2003 Nov;36(3):430-2.

11.

Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.

Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C.

BMC Genomics. 2008 Jan 27;9:44. doi: 10.1186/1471-2164-9-44.

12.

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica.

Oki N, Yano K, Okumoto Y, Tsukiyama T, Teraishi M, Tanisaka T.

Genes Genet Syst. 2008 Aug;83(4):321-9.

13.

Identification of active transposon dTok, a member of the hAT family, in rice.

Moon S, Jung KH, Lee DE, Jiang WZ, Koh HJ, Heu MH, Lee DS, Suh HS, An G.

Plant Cell Physiol. 2006 Nov;47(11):1473-83. Epub 2006 Sep 20.

PMID:
16990289
14.

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).

Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S.

Science. 2002 Apr 5;296(5565):92-100.

15.

Structural and functional analysis of rice genome.

Tyagi AK, Khurana JP, Khurana P, Raghuvanshi S, Gaur A, Kapur A, Gupta V, Kumar D, Ravi V, Vij S, Khurana P, Sharma S.

J Genet. 2004 Apr;83(1):79-99. Review.

16.

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants.

Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K.

Mol Genet Genomics. 2002 Dec;268(4):434-45. Epub 2002 Nov 1.

PMID:
12471441
17.

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).

Wang D, Pei K, Fu Y, Sun Z, Li S, Liu H, Tang K, Han B, Tao Y.

Gene. 2007 Jun 1;394(1-2):13-24. Epub 2007 Jan 26.

PMID:
17408882
18.

Identification and mapping of expressed genes, simple sequence repeats and transposable elements in centromeric regions of rice chromosomes.

Mizuno H, Ito K, Wu J, Tanaka T, Kanamori H, Katayose Y, Sasaki T, Matsumoto T.

DNA Res. 2006 Dec 31;13(6):267-74. Epub 2007 Feb 12.

PMID:
17298954
19.

Genomic characterization of Rim2/Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome.

Wang GD, Tian PF, Cheng ZK, Wu G, Jiang JM, Li DB, Li Q, He ZH.

Mol Genet Genomics. 2003 Nov;270(3):234-42. Epub 2003 Sep 26.

PMID:
14513364
20.

Fertility restorer locus Rf1 [corrected] of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12.

Klein RR, Klein PE, Mullet JE, Minx P, Rooney WL, Schertz KF.

Theor Appl Genet. 2005 Oct;111(6):994-1012. Epub 2005 Aug 3. Erratum in: Theor Appl Genet. 2006 Jan;112(2):388.

PMID:
16078015

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