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Items: 1 to 20 of 121

1.
2.

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast.

Papp B, Pál C, Hurst LD.

Nature. 2004 Jun 10;429(6992):661-4.

PMID:
15190353
3.

Metabolic functions of duplicate genes in Saccharomyces cerevisiae.

Kuepfer L, Sauer U, Blank LM.

Genome Res. 2005 Oct;15(10):1421-30.

4.

13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose.

Jouhten P, Pitkänen E, Pakula T, Saloheimo M, Penttilä M, Maaheimo H.

BMC Syst Biol. 2009 Oct 29;3:104. doi: 10.1186/1752-0509-3-104.

5.

An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments.

Rantanen A, Rousu J, Jouhten P, Zamboni N, Maaheimo H, Ukkonen E.

BMC Bioinformatics. 2008 Jun 6;9:266. doi: 10.1186/1471-2105-9-266.

6.

Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks.

Cakir T, Kirdar B, Ulgen KO.

Biotechnol Bioeng. 2004 May 5;86(3):251-60.

PMID:
15083505
7.

13C metabolic flux analysis at a genome-scale.

Gopalakrishnan S, Maranas CD.

Metab Eng. 2015 Nov;32:12-22. doi: 10.1016/j.ymben.2015.08.006. Epub 2015 Sep 8.

PMID:
26358840
8.

Connecting extracellular metabolomic measurements to intracellular flux states in yeast.

Mo ML, Palsson BO, Herrgård MJ.

BMC Syst Biol. 2009 Mar 25;3:37. doi: 10.1186/1752-0509-3-37.

9.

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism.

Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, Cheevadhanarak S, Nielsen J, Bhumiratana S.

BMC Syst Biol. 2008 Aug 7;2:71. doi: 10.1186/1752-0509-2-71.

10.

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A.

Jouhten P, Rintala E, Huuskonen A, Tamminen A, Toivari M, Wiebe M, Ruohonen L, Penttilä M, Maaheimo H.

BMC Syst Biol. 2008 Jul 9;2:60. doi: 10.1186/1752-0509-2-60.

11.

Role of duplicate genes in genetic robustness against null mutations.

Gu Z, Steinmetz LM, Gu X, Scharfe C, Davis RW, Li WH.

Nature. 2003 Jan 2;421(6918):63-6.

PMID:
12511954
12.

The role of domain redundancy in genetic robustness against null mutations.

Pasek S, Risler JL, Brézellec P.

J Mol Biol. 2006 Sep 15;362(2):184-91. Epub 2006 Jul 25.

PMID:
16914158
13.

Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae.

Ghosh A, Zhao H, Price ND.

PLoS One. 2011;6(11):e27316. doi: 10.1371/journal.pone.0027316. Epub 2011 Nov 4.

14.

Flux coupling analysis of genome-scale metabolic network reconstructions.

Burgard AP, Nikolaev EV, Schilling CH, Maranas CD.

Genome Res. 2004 Feb;14(2):301-12. Epub 2004 Jan 12.

15.

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.

Bundy JG, Papp B, Harmston R, Browne RA, Clayson EM, Burton N, Reece RJ, Oliver SG, Brindle KM.

Genome Res. 2007 Apr;17(4):510-9. Epub 2007 Mar 5.

16.
17.

Phenotypic characterization of glucose repression mutants of Saccharomyces cerevisiae using experiments with 13C-labelled glucose.

Raghevendran V, Gombert AK, Christensen B, Kötter P, Nielsen J.

Yeast. 2004 Jul 15;21(9):769-79.

18.

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p.

Moxley JF, Jewett MC, Antoniewicz MR, Villas-Boas SG, Alper H, Wheeler RT, Tong L, Hinnebusch AG, Ideker T, Nielsen J, Stephanopoulos G.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6477-82. doi: 10.1073/pnas.0811091106. Epub 2009 Apr 3.

19.
20.

Network identification and flux quantification of glucose metabolism in Rhodobacter sphaeroides under photoheterotrophic H(2)-producing conditions.

Tao Y, Liu D, Yan X, Zhou Z, Lee JK, Yang C.

J Bacteriol. 2012 Jan;194(2):274-83. doi: 10.1128/JB.05624-11. Epub 2011 Nov 4.

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