Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 126

1.

Standardizing global gene expression analysis between laboratories and across platforms.

Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H; Members of the Toxicogenomics Research Consortium..

Nat Methods. 2005 May;2(5):351-6. Erratum in: Nat Methods. 2005 Jun;2(6):477.

PMID:
15846362
2.

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

BMC Bioinformatics. 2007 Oct 25;8:412.

3.

Multiple-laboratory comparison of microarray platforms.

Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martínez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W.

Nat Methods. 2005 May;2(5):345-50. Erratum in: Nat Methods. 2005 Jun;2(6):477.

4.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

5.

Independence and reproducibility across microarray platforms.

Larkin JE, Frank BC, Gavras H, Sultana R, Quackenbush J.

Nat Methods. 2005 May;2(5):337-44.

6.
7.

Evaluation of gene expression measurements from commercial microarray platforms.

Tan PK, Downey TJ, Spitznagel EL Jr, Xu P, Fu D, Dimitrov DS, Lempicki RA, Raaka BM, Cam MC.

Nucleic Acids Res. 2003 Oct 1;31(19):5676-84.

8.

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK.

Nat Biotechnol. 2006 Jul;24(7):832-40.

PMID:
16823376
9.

A rapid method for microarray cross platform comparisons using gene expression signatures.

Cheadle C, Becker KG, Cho-Chung YS, Nesterova M, Watkins T, Wood W 3rd, Prabhu V, Barnes KC.

Mol Cell Probes. 2007 Feb;21(1):35-46.

PMID:
16982174
10.

Evaluation of external RNA controls for the assessment of microarray performance.

Tong W, Lucas AB, Shippy R, Fan X, Fang H, Hong H, Orr MS, Chu TM, Guo X, Collins PJ, Sun YA, Wang SJ, Bao W, Wolfinger RD, Shchegrova S, Guo L, Warrington JA, Shi L.

Nat Biotechnol. 2006 Sep;24(9):1132-9.

PMID:
16964227
11.

Using RNA sample titrations to assess microarray platform performance and normalization techniques.

Shippy R, Fulmer-Smentek S, Jensen RV, Jones WD, Wolber PK, Johnson CD, Pine PS, Boysen C, Guo X, Chudin E, Sun YA, Willey JC, Thierry-Mieg J, Thierry-Mieg D, Setterquist RA, Wilson M, Lucas AB, Novoradovskaya N, Papallo A, Turpaz Y, Baker SC, Warrington JA, Shi L, Herman D.

Nat Biotechnol. 2006 Sep;24(9):1123-31.

12.

Ecotoxicogenomics: Microarray interlaboratory comparability.

Vidal-Dorsch DE, Bay SM, Moore S, Layton B, Mehinto AC, Vulpe CD, Brown-Augustine M, Loguinov A, Poynton H, Garcia-Reyero N, Perkins EJ, Escalon L, Denslow ND, Cristina CD, Doan T, Shukradas S, Bruno J, Brown L, Van Agglen G, Jackman P, Bauer M.

Chemosphere. 2016 Feb;144:193-200. doi: 10.1016/j.chemosphere.2015.08.019.

PMID:
26363320
13.
14.

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.

Maouche S, Poirier O, Godefroy T, Olaso R, Gut I, Collet JP, Montalescot G, Cambien F.

BMC Genomics. 2008 Jun 25;9:302. doi: 10.1186/1471-2164-9-302.

15.

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.

Severgnini M, Bicciato S, Mangano E, Scarlatti F, Mezzelani A, Mattioli M, Ghidoni R, Peano C, Bonnal R, Viti F, Milanesi L, De Bellis G, Battaglia C.

Anal Biochem. 2006 Jun 1;353(1):43-56.

PMID:
16624241
16.

Performance comparison of multiple microarray platforms for gene expression profiling.

Liu F, Kuo WP, Jenssen TK, Hovig E.

Methods Mol Biol. 2012;802:141-55. doi: 10.1007/978-1-61779-400-1_10.

PMID:
22130879
17.

Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.

Autio R, Kilpinen S, Saarela M, Kallioniemi O, Hautaniemi S, Astola J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S24. doi: 10.1186/1471-2105-10-S1-S24.

18.

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats.

Thompson KL, Rosenzweig BA, Pine PS, Retief J, Turpaz Y, Afshari CA, Hamadeh HK, Damore MA, Boedigheimer M, Blomme E, Ciurlionis R, Waring JF, Fuscoe JC, Paules R, Tucker CJ, Fare T, Coffey EM, He Y, Collins PJ, Jarnagin K, Fujimoto S, Ganter B, Kiser G, Kaysser-Kranich T, Sina J, Sistare FD.

Nucleic Acids Res. 2005 Dec 23;33(22):e187.

19.

Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.

He YD, Dai H, Schadt EE, Cavet G, Edwards SW, Stepaniants SB, Duenwald S, Kleinhanz R, Jones AR, Shoemaker DD, Stoughton RB.

Bioinformatics. 2003 May 22;19(8):956-65.

PMID:
12761058
20.

Effect of various normalization methods on Applied Biosystems expression array system data.

Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, Chan F, Poulter KA, Samaha RR.

BMC Bioinformatics. 2006 Dec 15;7:533.

Supplemental Content

Support Center