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Items: 1 to 20 of 171

1.

Solution structure of an Arabidopsis WRKY DNA binding domain.

Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S.

Plant Cell. 2005 Mar;17(3):944-56. Epub 2005 Feb 10.

2.

Structural basis for sequence-specific DNA recognition by an Arabidopsis WRKY transcription factor.

Yamasaki K, Kigawa T, Watanabe S, Inoue M, Yamasaki T, Seki M, Shinozaki K, Yokoyama S.

J Biol Chem. 2012 Mar 2;287(10):7683-91. doi: 10.1074/jbc.M111.279844. Epub 2012 Jan 4.

3.

A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.

Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Nunokawa E, Ishizuka Y, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S.

J Mol Biol. 2004 Mar 12;337(1):49-63.

PMID:
15001351
4.

PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.

Bowen AJ, Gonzalez D, Mullins JG, Bhatt AM, Martinez A, Conlan RS.

J Mol Biol. 2010 Feb 5;395(5):937-49. doi: 10.1016/j.jmb.2009.11.065. Epub 2009 Dec 4.

PMID:
19962994
5.

An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure.

Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S.

FEBS Lett. 2006 Apr 3;580(8):2109-16. Epub 2006 Mar 20.

6.

Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains.

Birkenbihl RP, Jach G, Saedler H, Huijser P.

J Mol Biol. 2005 Sep 23;352(3):585-96.

PMID:
16095614
7.

Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins.

Maeo K, Hayashi S, Kojima-Suzuki H, Morikami A, Nakamura K.

Biosci Biotechnol Biochem. 2001 Nov;65(11):2428-36.

8.

Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain: a new fold with an additional C-terminal helix.

Sue SC, Hsiao HH, Chung BC, Cheng YH, Hsueh KL, Chen CM, Ho CH, Huang TH.

J Mol Biol. 2006 Feb 10;356(1):72-85. Epub 2005 Nov 22.

PMID:
16337232
9.

Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors.

Cheng Y, Zhou Y, Yang Y, Chi YJ, Zhou J, Chen JY, Wang F, Fan B, Shi K, Zhou YH, Yu JQ, Chen Z.

Plant Physiol. 2012 Jun;159(2):810-25. doi: 10.1104/pp.112.196816. Epub 2012 Apr 24.

10.

Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.

Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S.

J Mol Biol. 2005 Apr 29;348(2):253-64.

PMID:
15811366
11.

Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.

Hosoda K, Imamura A, Katoh E, Hatta T, Tachiki M, Yamada H, Mizuno T, Yamazaki T.

Plant Cell. 2002 Sep;14(9):2015-29.

12.

In silico analysis on structure and DNA binding mode of AtNAC1, a NAC transcription factor from Arabidopsis thaliana.

Zhu Q, Zou J, Zhu M, Liu Z, Feng P, Fan G, Wang W, Liao H.

J Mol Model. 2014 Mar;20(3):2117. doi: 10.1007/s00894-014-2117-8. Epub 2014 Feb 26.

PMID:
24570356
13.

DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors.

Welner DH, Lindemose S, Grossmann JG, Møllegaard NE, Olsen AN, Helgstrand C, Skriver K, Lo Leggio L.

Biochem J. 2012 Jun 15;444(3):395-404. doi: 10.1042/BJ20111742.

PMID:
22455904
14.

Four divergent Arabidopsis ethylene-responsive element-binding factor domains bind to a target DNA motif with a universal CG step core recognition and different flanking bases preference.

Yang S, Wang S, Liu X, Yu Y, Yue L, Wang X, Hao D.

FEBS J. 2009 Dec;276(23):7177-86. doi: 10.1111/j.1742-4658.2009.07428.x. Epub 2009 Oct 29.

15.

Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function.

Ciolkowski I, Wanke D, Birkenbihl RP, Somssich IE.

Plant Mol Biol. 2008 Sep;68(1-2):81-92. doi: 10.1007/s11103-008-9353-1. Epub 2008 Jun 4.

16.

Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation.

Nagata T, Niyada E, Fujimoto N, Nagasaki Y, Noto K, Miyanoiri Y, Murata J, Hiratsuka K, Katahira M.

Proteins. 2010 Nov 1;78(14):3033-47. doi: 10.1002/prot.22827.

PMID:
20717979
18.

DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein.

Duan MR, Nan J, Liang YH, Mao P, Lu L, Li L, Wei C, Lai L, Li Y, Su XD.

Nucleic Acids Res. 2007;35(4):1145-54. Epub 2007 Jan 30.

19.

Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1.

Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S.

Plant Cell. 2004 Dec;16(12):3448-59. Epub 2004 Nov 17.

20.

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