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Items: 1 to 20 of 118

1.

The Rat Genome Database (RGD): developments towards a phenome database.

de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D485-91.

2.

Rat Genome Database (RGD): mapping disease onto the genome.

Twigger S, Lu J, Shimoyama M, Chen D, Pasko D, Long H, Ginster J, Chen CF, Nigam R, Kwitek A, Eppig J, Maltais L, Maglott D, Schuler G, Jacob H, Tonellato PJ.

Nucleic Acids Res. 2002 Jan 1;30(1):125-8.

3.

The Rat Genome Database, update 2007--easing the path from disease to data and back again.

Twigger SN, Shimoyama M, Bromberg S, Kwitek AE, Jacob HJ; RGD Team.

Nucleic Acids Res. 2007 Jan;35(Database issue):D658-62. Epub 2006 Dec 6.

4.

Exploring genetic, genomic, and phenotypic data at the rat genome database.

Laulederkind SJ, Hayman GT, Wang SJ, Lowry TF, Nigam R, Petri V, Smith JR, Dwinell MR, Jacob HJ, Shimoyama M.

Curr Protoc Bioinformatics. 2012 Dec;Chapter 1:Unit1.14. doi: 10.1002/0471250953.bi0114s40.

5.

The Rat Genome Database 2009: variation, ontologies and pathways.

Dwinell MR, Worthey EA, Shimoyama M, Bakir-Gungor B, DePons J, Laulederkind S, Lowry T, Nigram R, Petri V, Smith J, Stoddard A, Twigger SN, Jacob HJ; RGD Team.

Nucleic Acids Res. 2009 Jan;37(Database issue):D744-9. doi: 10.1093/nar/gkn842. Epub 2008 Nov 7.

6.

RatMap--rat genome tools and data.

Petersen G, Johnson P, Andersson L, Klinga-Levan K, Gómez-Fabre PM, Ståhl F.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D492-4.

7.

Exploring human disease using the Rat Genome Database.

Shimoyama M, Laulederkind SJ, De Pons J, Nigam R, Smith JR, Tutaj M, Petri V, Hayman GT, Wang SJ, Ghiasvand O, Thota J, Dwinell MR.

Dis Model Mech. 2016 Oct 1;9(10):1089-1095. Review.

8.

Ontology searching and browsing at the Rat Genome Database.

Laulederkind SJ, Tutaj M, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Dwinell MR, Jacob HJ.

Database (Oxford). 2012 Mar 20;2012:bas016. doi: 10.1093/database/bas016. Print 2012.

9.

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.

Shimoyama M, De Pons J, Hayman GT, Laulederkind SJ, Liu W, Nigam R, Petri V, Smith JR, Tutaj M, Wang SJ, Worthey E, Dwinell M, Jacob H.

Nucleic Acids Res. 2015 Jan;43(Database issue):D743-50. doi: 10.1093/nar/gku1026. Epub 2014 Oct 29.

10.

Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data.

Nigam R, Laulederkind SJ, Hayman GT, Smith JR, Wang SJ, Lowry TF, Petri V, De Pons J, Tutaj M, Liu W, Jayaraman P, Munzenmaier DH, Worthey EA, Dwinell MR, Shimoyama M, Jacob HJ.

Physiol Genomics. 2013 Sep 16;45(18):809-16. doi: 10.1152/physiolgenomics.00065.2013. Epub 2013 Jul 23.

11.

Exploring phenotypic data at the rat genome database.

Twigger SN, S Smith J, Zuniga-Meyer A, Bromberg SK.

Curr Protoc Bioinformatics. 2006 Jul;Chapter 1:Unit 1.14. doi: 10.1002/0471250953.bi0114s14.

PMID:
18428755
12.

The Rat Genome Database 2013--data, tools and users.

Laulederkind SJ, Hayman GT, Wang SJ, Smith JR, Lowry TF, Nigam R, Petri V, de Pons J, Dwinell MR, Shimoyama M, Munzenmaier DH, Worthey EA, Jacob HJ.

Brief Bioinform. 2013 Jul;14(4):520-6. doi: 10.1093/bib/bbt007. Epub 2013 Feb 22.

13.

Tools and strategies for physiological genomics: the Rat Genome Database.

Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ.

Physiol Genomics. 2005 Oct 17;23(2):246-56. Epub 2005 Aug 16.

14.

Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.

Twigger SN, Nie J, Ruotti V, Yu J, Chen D, Li D, Mathis J, Narayanasamy V, Gopinath GR, Pasko D, Shimoyama M, De La Cruz N, Bromberg S, Kwitek AE, Jacob HJ, Tonellato PJ.

Genome Res. 2004 Apr;14(4):651-60.

15.

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.

Laulederkind SJ, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Kowalski G, Liu W, Rood W, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ; RGD Team.

Database (Oxford). 2011 Feb 14;2011:bar002. doi: 10.1093/database/bar002. Print 2011.

16.

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse.

Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2014 Jan;42(Database issue):D810-7. doi: 10.1093/nar/gkt1225. Epub 2013 Nov 26.

17.

RGD: a comparative genomics platform.

Shimoyama M, Smith JR, Hayman T, Laulederkind S, Lowry T, Nigam R, Petri V, Wang SJ, Dwinell M, Jacob H; RGD Team.

Hum Genomics. 2011 Jan;5(2):124-9.

18.

A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.

Steen RG, Kwitek-Black AE, Glenn C, Gullings-Handley J, Van Etten W, Atkinson OS, Appel D, Twigger S, Muir M, Mull T, Granados M, Kissebah M, Russo K, Crane R, Popp M, Peden M, Matise T, Brown DM, Lu J, Kingsmore S, Tonellato PJ, Rozen S, Slonim D, Young P, Jacob HJ.

Genome Res. 1999 Jun;9(6):AP1-8, insert. Erratum in: Genome Res 1999 Aug;9(8):793.

19.

The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.

Hayman GT, Laulederkind SJ, Smith JR, Wang SJ, Petri V, Nigam R, Tutaj M, De Pons J, Dwinell MR, Shimoyama M.

Database (Oxford). 2016 Mar 23;2016. pii: baw034. doi: 10.1093/database/baw034. Print 2016.

20.

PhenoMiner: quantitative phenotype curation at the rat genome database.

Laulederkind SJ, Liu W, Smith JR, Hayman GT, Wang SJ, Nigam R, Petri V, Lowry TF, de Pons J, Dwinell MR, Shimoyama M.

Database (Oxford). 2013 Apr 19;2013:bat015. doi: 10.1093/database/bat015. Print 2013.

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