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Items: 1 to 20 of 81

1.

Shared components of protein complexes--versatile building blocks or biochemical artefacts?

Krause R, von Mering C, Bork P, Dandekar T.

Bioessays. 2004 Dec;26(12):1333-43.

PMID:
15551274
2.

A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens.

Krause R, von Mering C, Bork P.

Bioinformatics. 2003 Oct 12;19(15):1901-8.

PMID:
14555622
3.

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions.

Tackett AJ, DeGrasse JA, Sekedat MD, Oeffinger M, Rout MP, Chait BT.

J Proteome Res. 2005 Sep-Oct;4(5):1752-6.

PMID:
16212429
4.

An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints.

Lee TY, Horng JT, Juan HF, Huang HD, Wu LC, Tsai MF, Huang HC.

J Comput Chem. 2006 Jul 15;27(9):1020-32.

PMID:
16639701
5.

Mass spectrometry-based approaches to protein-ligand interactions.

Schermann SM, Simmons DA, Konermann L.

Expert Rev Proteomics. 2005 Aug;2(4):475-85. Review.

PMID:
16097882
6.

3did: interacting protein domains of known three-dimensional structure.

Stein A, Russell RB, Aloy P.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D413-7.

7.

Protein domain prediction.

Ingolfsson H, Yona G.

Methods Mol Biol. 2008;426:117-43. doi: 10.1007/978-1-60327-058-8_7.

PMID:
18542860
8.

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.

Li H, Li J, Wong L.

Bioinformatics. 2006 Apr 15;22(8):989-96. Epub 2006 Jan 29.

PMID:
16446278
9.

Comparative assessment of large-scale data sets of protein-protein interactions.

von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P.

Nature. 2002 May 23;417(6887):399-403. Epub 2002 May 8.

PMID:
12000970
10.

Searching for hypothetical proteins: theory and practice based upon original data and literature.

Lubec G, Afjehi-Sadat L, Yang JW, John JP.

Prog Neurobiol. 2005 Sep-Oct;77(1-2):90-127. Epub 2005 Nov 4. Review.

PMID:
16271823
11.

Purifying protein complexes for mass spectrometry: applications to protein translation.

Link AJ, Fleischer TC, Weaver CM, Gerbasi VR, Jennings JL.

Methods. 2005 Mar;35(3):274-90. Epub 2005 Jan 12.

PMID:
15722224
12.
13.

Macromolecular recognition in the Protein Data Bank.

Janin J, Rodier F, Chakrabarti P, Bahadur RP.

Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):1-8. Epub 2006 Dec 13.

14.

Modulation of protein-protein interactions with small organic molecules.

Berg T.

Angew Chem Int Ed Engl. 2003 Jun 6;42(22):2462-81. Review.

PMID:
12800163
15.
16.

Experimental and bioinformatic approaches for interrogating protein-protein interactions to determine protein function.

Droit A, Poirier GG, Hunter JM.

J Mol Endocrinol. 2005 Apr;34(2):263-80. Review.

PMID:
15821096
17.
18.

Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.

Inbar Y, Benyamini H, Nussinov R, Wolfson HJ.

Phys Biol. 2005 Nov 9;2(4):S156-65.

PMID:
16280621
19.

Discovery of regulatory molecular events and biomarkers using 2D capillary chromatography and mass spectrometry.

Powell DW, Merchant ML, Link AJ.

Expert Rev Proteomics. 2006 Feb;3(1):63-74. Review.

PMID:
16445351
20.

Large-scale functional analysis using peptide or protein arrays.

Emili AQ, Cagney G.

Nat Biotechnol. 2000 Apr;18(4):393-7. Review.

PMID:
10748518

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