Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 106

1.

Empirical evaluation of data transformations and ranking statistics for microarray analysis.

Qin LX, Kerr KF; Contributing Members of the Toxicogenomics Research Consortium.

Nucleic Acids Res. 2004 Oct 12;32(18):5471-9. Print 2004. Erratum in: Nucleic Acids Res. 2004 Nov 8;32(19):5972. Nucleic Acids Res. 2004 Dec;32(22):6718.

2.

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison.

Sioson AA, Mane SP, Li P, Sha W, Heath LS, Bohnert HJ, Grene R.

BMC Bioinformatics. 2006 Apr 20;7:215.

3.

Identifying differentially expressed genes from microarray experiments via statistic synthesis.

Yang YH, Xiao Y, Segal MR.

Bioinformatics. 2005 Apr 1;21(7):1084-93. Epub 2004 Oct 28.

PMID:
15513985
5.

Pre-processing Agilent microarray data.

Zahurak M, Parmigiani G, Yu W, Scharpf RB, Berman D, Schaeffer E, Shabbeer S, Cope L.

BMC Bioinformatics. 2007 May 1;8:142.

6.

Pre-processing of microarray data and analysis of differential expression.

Durinck S.

Methods Mol Biol. 2008;452:89-110. doi: 10.1007/978-1-60327-159-2_4. Review.

PMID:
18563370
7.
8.

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

BMC Bioinformatics. 2006 Dec 19;7:538.

9.

BAMarraytrade mark: Java software for Bayesian analysis of variance for microarray data.

Ishwaran H, Rao JS, Kogalur UB.

BMC Bioinformatics. 2006 Feb 8;7:59.

10.

Ranking analysis for identifying differentially expressed genes.

Qi Y, Sun H, Sun Q, Pan L.

Genomics. 2011 May;97(5):326-9. doi: 10.1016/j.ygeno.2011.03.002. Epub 2011 Mar 22.

11.

Impact of DNA microarray data transformation on gene expression analysis - comparison of two normalization methods.

Schmidt MT, Handschuh L, Zyprych J, Szabelska A, Olejnik-Schmidt AK, Siatkowski I, Figlerowicz M.

Acta Biochim Pol. 2011;58(4):573-80. Epub 2011 Dec 20.

12.
13.

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.

Shi L, Jones WD, Jensen RV, Harris SC, Perkins RG, Goodsaid FM, Guo L, Croner LJ, Boysen C, Fang H, Qian F, Amur S, Bao W, Barbacioru CC, Bertholet V, Cao XM, Chu TM, Collins PJ, Fan XH, Frueh FW, Fuscoe JC, Guo X, Han J, Herman D, Hong H, Kawasaki ES, Li QZ, Luo Y, Ma Y, Mei N, Peterson RL, Puri RK, Shippy R, Su Z, Sun YA, Sun H, Thorn B, Turpaz Y, Wang C, Wang SJ, Warrington JA, Willey JC, Wu J, Xie Q, Zhang L, Zhang L, Zhong S, Wolfinger RD, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S10. doi: 10.1186/1471-2105-9-S9-S10.

14.

The effects of normalization on the correlation structure of microarray data.

Qiu X, Brooks AI, Klebanov L, Yakovlev N.

BMC Bioinformatics. 2005 May 16;6:120.

15.

A friendly statistics package for microarray analysis.

Sykacek P, Furlong RA, Micklem G.

Bioinformatics. 2005 Nov 1;21(21):4069-70. Epub 2005 Sep 27.

PMID:
16188932
16.

Ranking analysis of F-statistics for microarray data.

Tan YD, Fornage M, Xu H.

BMC Bioinformatics. 2008 Mar 6;9:142. doi: 10.1186/1471-2105-9-142.

17.

Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis.

Hoffmann R, Seidl T, Dugas M.

Genome Biol. 2002 Jun 14;3(7):RESEARCH0033. Epub 2002 Jun 14.

18.

Cross platform microarray analysis for robust identification of differentially expressed genes.

Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S5.

19.

Detecting differential expression in microarray data: comparison of optimal procedures.

Perelman E, Ploner A, Calza S, Pawitan Y.

BMC Bioinformatics. 2007 Jan 26;8:28.

20.

A new outlier removal approach for cDNA microarray normalization.

Wu Y, Yan L, Liu H, Sun H, Xie H.

Biotechniques. 2009 Aug;47(2):691-2, 694-700. doi: 10.2144/000113195.

Supplemental Content

Support Center