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Items: 1 to 20 of 198

1.

affy--analysis of Affymetrix GeneChip data at the probe level.

Gautier L, Cope L, Bolstad BM, Irizarry RA.

Bioinformatics. 2004 Feb 12;20(3):307-15.

2.

CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.

Kong SW, Hwang KB, Kim RD, Zhang BT, Greenberg SA, Kohane IS, Park PJ.

Bioinformatics. 2005 May 1;21(9):2116-7.

3.

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP.

Bioinformatics. 2004 Feb 12;20(3):323-31.

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6.

MatArray: a Matlab toolbox for microarray data.

Venet D.

Bioinformatics. 2003 Mar 22;19(5):659-60.

7.

Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.

Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.

BMC Bioinformatics. 2007 Jun 11;8:194.

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9.

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.

Turro E, Bochkina N, Hein AM, Richardson S.

BMC Bioinformatics. 2007 Nov 12;8:439.

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11.

EMMA: a platform for consistent storage and efficient analysis of microarray data.

Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):135-46.

PMID:
14651856
12.

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

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14.

AVA: visual analysis of gene expression microarray data.

Zhou Y, Liu J.

Bioinformatics. 2003 Jan 22;19(2):293-4.

15.

DNMAD: web-based diagnosis and normalization for microarray data.

Vaquerizas JM, Dopazo J, Díaz-Uriarte R.

Bioinformatics. 2004 Dec 12;20(18):3656-8.

16.

SSHSuite: an integrated software package for analysis of large-scale suppression subtractive hybridization data.

Weckx S, De Rijk P, Van Broeckhoven C, Del-Favero J.

Biotechniques. 2004 Jun;36(6):1043-5.

PMID:
15211756
17.

Gene expression data preprocessing.

Herrero J, Díaz-Uriarte R, Dopazo J.

Bioinformatics. 2003 Mar 22;19(5):655-6.

18.

AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.

Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.

Bioinformatics. 2007 Sep 15;23(18):2385-90.

19.

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

Menssen A, Edinger G, Grün JR, Haase U, Baumgrass R, Grützkau A, Radbruch A, Burmester GR, Häupl T.

BMC Genomics. 2009 Mar 5;10:98. doi: 10.1186/1471-2164-10-98.

20.

Client-server environment for high-performance gene expression data analysis.

Sturn A, Mlecnik B, Pieler R, Rainer J, Truskaller T, Trajanoski Z.

Bioinformatics. 2003 Apr 12;19(6):772-3.

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